Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CIITAP33076 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CIITAP33076 PRYP6-201ENST00000514804 343 ntBASIC18.71■□□□□ 0.59
CIITAP33076 IGHV3-62-201ENST00000520057 340 ntBASIC18.71■□□□□ 0.59
CIITAP33076 AC105233.2-201ENST00000523697 349 ntBASIC18.71■□□□□ 0.59
CIITAP33076 AF228730.5-201ENST00000530288 346 ntBASIC18.71■□□□□ 0.59
CIITAP33076 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.71■□□□□ 0.59
CIITAP33076 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.71■□□□□ 0.59
CIITAP33076 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.71■□□□□ 0.59
CIITAP33076 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.71■□□□□ 0.59
CIITAP33076 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.71■□□□□ 0.59
CIITAP33076 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CIITAP33076 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CIITAP33076 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.71■□□□□ 0.59
CIITAP33076 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CIITAP33076 AC011676.5-201ENST00000624864 2660 ntBASIC18.71■□□□□ 0.59
CIITAP33076 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CIITAP33076 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.71■□□□□ 0.59
CIITAP33076 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CIITAP33076 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.7■□□□□ 0.58
CIITAP33076 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
CIITAP33076 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.7■□□□□ 0.58
CIITAP33076 GPS2P2-201ENST00000430745 888 ntBASIC18.7■□□□□ 0.58
CIITAP33076 AC005237.2-201ENST00000434368 219 ntBASIC18.7■□□□□ 0.58
CIITAP33076 AC093724.1-201ENST00000448659 1027 ntBASIC18.7■□□□□ 0.58
CIITAP33076 HLA-J-203ENST00000494367 1087 ntBASIC18.7■□□□□ 0.58
CIITAP33076 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.7■□□□□ 0.58
CIITAP33076 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.7■□□□□ 0.58
CIITAP33076 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 UBALD1-205ENST00000590891 2641 ntBASIC18.7■□□□□ 0.58
CIITAP33076 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 PCGF3-213ENST00000620529 1899 ntBASIC18.7■□□□□ 0.58
CIITAP33076 LINC01144-201ENST00000626198 1710 ntBASIC18.7■□□□□ 0.58
CIITAP33076 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CIITAP33076 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 NKILA-202ENST00000614771 2598 ntBASIC18.7■□□□□ 0.58
CIITAP33076 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CIITAP33076 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.69■□□□□ 0.58
CIITAP33076 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.69■□□□□ 0.58
CIITAP33076 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.69■□□□□ 0.58
CIITAP33076 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CIITAP33076 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
CIITAP33076 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CIITAP33076 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.69■□□□□ 0.58
CIITAP33076 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.69■□□□□ 0.58
CIITAP33076 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 AL139400.1-201ENST00000366220 510 ntBASIC18.69■□□□□ 0.58
CIITAP33076 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CIITAP33076 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.69■□□□□ 0.58
CIITAP33076 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.69■□□□□ 0.58
CIITAP33076 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.69■□□□□ 0.58
CIITAP33076 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.69■□□□□ 0.58
CIITAP33076 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.69■□□□□ 0.58
CIITAP33076 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.69■□□□□ 0.58
CIITAP33076 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.69■□□□□ 0.58
CIITAP33076 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
CIITAP33076 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.69■□□□□ 0.58
CIITAP33076 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.69■□□□□ 0.58
CIITAP33076 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CIITAP33076 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CIITAP33076 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CIITAP33076 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.68■□□□□ 0.58
CIITAP33076 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CIITAP33076 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.68■□□□□ 0.58
CIITAP33076 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms