Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.04■□□□□ 0.64
SMARCA1P28370 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.04■□□□□ 0.64
SMARCA1P28370 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCA1P28370 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 PCDHA12-202ENST00000613593 2588 ntBASIC19.03■□□□□ 0.64
SMARCA1P28370 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.03■□□□□ 0.64
SMARCA1P28370 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.03■□□□□ 0.64
SMARCA1P28370 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.03■□□□□ 0.64
SMARCA1P28370 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SMARCA1P28370 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.03■□□□□ 0.64
SMARCA1P28370 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.03■□□□□ 0.64
SMARCA1P28370 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 SLC25A39P2-201ENST00000537614 270 ntBASIC19.03■□□□□ 0.64
SMARCA1P28370 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SMARCA1P28370 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.03■□□□□ 0.64
SMARCA1P28370 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.03■□□□□ 0.64
SMARCA1P28370 UBALD1-205ENST00000590891 2641 ntBASIC19.03■□□□□ 0.64
SMARCA1P28370 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMARCA1P28370 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SMARCA1P28370 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.02■□□□□ 0.64
SMARCA1P28370 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.02■□□□□ 0.64
SMARCA1P28370 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 UXT-AS1-201ENST00000590504 1525 ntBASIC19.02■□□□□ 0.64
SMARCA1P28370 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.02■□□□□ 0.64
SMARCA1P28370 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 FAM220BP-201ENST00000377689 816 ntBASIC19.02■□□□□ 0.64
SMARCA1P28370 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SMARCA1P28370 KRT18P32-201ENST00000424695 1287 ntBASIC19.02■□□□□ 0.64
SMARCA1P28370 AC092183.1-201ENST00000469884 875 ntBASIC19.02■□□□□ 0.64
SMARCA1P28370 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.02■□□□□ 0.64
SMARCA1P28370 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.02■□□□□ 0.64
SMARCA1P28370 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SMARCA1P28370 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SMARCA1P28370 AC005622.1-201ENST00000636801 1703 ntBASIC19.02■□□□□ 0.63
SMARCA1P28370 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
SMARCA1P28370 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SMARCA1P28370 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.02■□□□□ 0.63
SMARCA1P28370 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
SMARCA1P28370 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
SMARCA1P28370 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.01■□□□□ 0.63
SMARCA1P28370 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.01■□□□□ 0.63
SMARCA1P28370 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 AL589702.1-201ENST00000641229 1509 ntBASIC19.01■□□□□ 0.63
SMARCA1P28370 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.01■□□□□ 0.63
SMARCA1P28370 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
SMARCA1P28370 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
SMARCA1P28370 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.01■□□□□ 0.63
SMARCA1P28370 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.01■□□□□ 0.63
SMARCA1P28370 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.01■□□□□ 0.63
SMARCA1P28370 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.01■□□□□ 0.63
SMARCA1P28370 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.01■□□□□ 0.63
SMARCA1P28370 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.01■□□□□ 0.63
SMARCA1P28370 AP001059.3-201ENST00000619053 235 ntBASIC19.01■□□□□ 0.63
SMARCA1P28370 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
SMARCA1P28370 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.01■□□□□ 0.63
SMARCA1P28370 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.01■□□□□ 0.63
SMARCA1P28370 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.01■□□□□ 0.63
SMARCA1P28370 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SMARCA1P28370 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SMARCA1P28370 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
SMARCA1P28370 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMARCA1P28370 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms