Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AL035633.1-201ENST00000406139 838 ntBASIC18.15■□□□□ 0.5
RFX1P22670 MKNK2P1-201ENST00000437526 628 ntBASIC18.15■□□□□ 0.5
RFX1P22670 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.15■□□□□ 0.5
RFX1P22670 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RFX1P22670 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RFX1P22670 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.15■□□□□ 0.5
RFX1P22670 MIR4492-201ENST00000581627 80 ntBASIC18.15■□□□□ 0.5
RFX1P22670 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.15■□□□□ 0.5
RFX1P22670 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.15■□□□□ 0.5
RFX1P22670 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.15■□□□□ 0.5
RFX1P22670 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX1P22670 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.15■□□□□ 0.5
RFX1P22670 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX1P22670 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
RFX1P22670 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RFX1P22670 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX1P22670 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX1P22670 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX1P22670 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RFX1P22670 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX1P22670 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RFX1P22670 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RFX1P22670 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX1P22670 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.15■□□□□ 0.5
RFX1P22670 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
RFX1P22670 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.14■□□□□ 0.5
RFX1P22670 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
RFX1P22670 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
RFX1P22670 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 ELL2P1-201ENST00000413990 1906 ntBASIC18.14■□□□□ 0.49
RFX1P22670 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 RPS15P9-201ENST00000494093 319 ntBASIC18.14■□□□□ 0.49
RFX1P22670 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.14■□□□□ 0.49
RFX1P22670 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.14■□□□□ 0.49
RFX1P22670 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.14■□□□□ 0.49
RFX1P22670 AC004449.1-201ENST00000564240 433 ntBASIC18.14■□□□□ 0.49
RFX1P22670 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.14■□□□□ 0.49
RFX1P22670 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.14■□□□□ 0.49
RFX1P22670 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.14■□□□□ 0.49
RFX1P22670 AC092865.6-201ENST00000642101 219 ntBASIC18.14■□□□□ 0.49
RFX1P22670 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
RFX1P22670 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX1P22670 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX1P22670 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.14■□□□□ 0.49
RFX1P22670 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.13■□□□□ 0.49
RFX1P22670 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 AC073621.1-201ENST00000392730 636 ntBASIC18.13■□□□□ 0.49
RFX1P22670 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
RFX1P22670 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
RFX1P22670 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
RFX1P22670 SLC25A6P2-201ENST00000497974 877 ntBASIC18.13■□□□□ 0.49
RFX1P22670 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.13■□□□□ 0.49
RFX1P22670 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.13■□□□□ 0.49
RFX1P22670 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.13■□□□□ 0.49
RFX1P22670 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.13■□□□□ 0.49
RFX1P22670 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.13■□□□□ 0.49
RFX1P22670 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX1P22670 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms