Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.25■□□□□ 0.67
LIG1P18858 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG1P18858 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.25■□□□□ 0.67
LIG1P18858 AL049840.3-201ENST00000602669 611 ntBASIC19.25■□□□□ 0.67
LIG1P18858 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.25■□□□□ 0.67
LIG1P18858 AL139288.1-201ENST00000623748 933 ntBASIC19.25■□□□□ 0.67
LIG1P18858 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LIG1P18858 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG1P18858 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.25■□□□□ 0.67
LIG1P18858 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIG1P18858 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG1P18858 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG1P18858 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIG1P18858 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.25■□□□□ 0.67
LIG1P18858 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG1P18858 AL596257.1-201ENST00000641463 2694 ntBASIC19.25■□□□□ 0.67
LIG1P18858 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.25■□□□□ 0.67
LIG1P18858 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIG1P18858 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LIG1P18858 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIG1P18858 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG1P18858 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LIG1P18858 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIG1P18858 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG1P18858 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.24■□□□□ 0.67
LIG1P18858 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.24■□□□□ 0.67
LIG1P18858 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LIG1P18858 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.24■□□□□ 0.67
LIG1P18858 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LIG1P18858 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LIG1P18858 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LIG1P18858 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.24■□□□□ 0.67
LIG1P18858 AL031284.1-201ENST00000419297 478 ntBASIC19.24■□□□□ 0.67
LIG1P18858 HNRNPDP1-201ENST00000439535 754 ntBASIC19.24■□□□□ 0.67
LIG1P18858 HLA-J-202ENST00000469281 1241 ntBASIC19.24■□□□□ 0.67
LIG1P18858 AL662844.1-201ENST00000546340 181 ntBASIC19.24■□□□□ 0.67
LIG1P18858 AP001005.1-201ENST00000571755 1248 ntBASIC19.24■□□□□ 0.67
LIG1P18858 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.24■□□□□ 0.67
LIG1P18858 AC064862.7-201ENST00000604520 867 ntBASIC19.24■□□□□ 0.67
LIG1P18858 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.24■□□□□ 0.67
LIG1P18858 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.24■□□□□ 0.67
LIG1P18858 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.24■□□□□ 0.67
LIG1P18858 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.24■□□□□ 0.67
LIG1P18858 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG1P18858 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.24■□□□□ 0.67
LIG1P18858 HLA-A-201ENST00000376802 1334 ntBASIC19.24■□□□□ 0.67
LIG1P18858 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.24■□□□□ 0.67
LIG1P18858 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LIG1P18858 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LIG1P18858 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.23■□□□□ 0.67
LIG1P18858 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.23■□□□□ 0.67
LIG1P18858 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.23■□□□□ 0.67
LIG1P18858 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.23■□□□□ 0.67
LIG1P18858 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
LIG1P18858 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.23■□□□□ 0.67
LIG1P18858 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG1P18858 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
LIG1P18858 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG1P18858 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms