Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
LDLRP01130 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.18■□□□□ 0.18
LDLRP01130 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.18■□□□□ 0.18
LDLRP01130 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.18■□□□□ 0.18
LDLRP01130 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.18■□□□□ 0.18
LDLRP01130 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.18■□□□□ 0.18
LDLRP01130 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.18■□□□□ 0.18
LDLRP01130 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.18■□□□□ 0.18
LDLRP01130 AP001269.4-201ENST00000609611 512 ntBASIC16.18■□□□□ 0.18
LDLRP01130 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.18■□□□□ 0.18
LDLRP01130 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.18■□□□□ 0.18
LDLRP01130 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LDLRP01130 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.18■□□□□ 0.18
LDLRP01130 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
LDLRP01130 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.17■□□□□ 0.18
LDLRP01130 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
LDLRP01130 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LDLRP01130 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.17■□□□□ 0.18
LDLRP01130 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.17■□□□□ 0.18
LDLRP01130 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.17■□□□□ 0.18
LDLRP01130 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.17■□□□□ 0.18
LDLRP01130 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.17■□□□□ 0.18
LDLRP01130 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
LDLRP01130 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.17■□□□□ 0.18
LDLRP01130 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.17■□□□□ 0.18
LDLRP01130 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
LDLRP01130 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.17■□□□□ 0.18
LDLRP01130 Z83851.2-201ENST00000609564 659 ntBASIC16.17■□□□□ 0.18
LDLRP01130 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
LDLRP01130 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.17■□□□□ 0.18
LDLRP01130 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
LDLRP01130 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LDLRP01130 AC063926.3-201ENST00000624734 5658 ntBASIC16.17■□□□□ 0.18
LDLRP01130 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.17■□□□□ 0.18
LDLRP01130 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LDLRP01130 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDLRP01130 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LDLRP01130 TP73-AS1-210ENST00000637775 1455 ntBASIC16.16■□□□□ 0.18
LDLRP01130 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 AC092364.2-201ENST00000596710 2692 ntBASIC16.16■□□□□ 0.18
LDLRP01130 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.16■□□□□ 0.18
LDLRP01130 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
LDLRP01130 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms