Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.83■□□□□ 0.77
MBD4O95243 AC084121.4-201ENST00000641598 221 ntBASIC19.83■□□□□ 0.77
MBD4O95243 AF228730.8-201ENST00000642140 221 ntBASIC19.83■□□□□ 0.77
MBD4O95243 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.83■□□□□ 0.76
MBD4O95243 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 PCDHA12-202ENST00000613593 2588 ntBASIC19.83■□□□□ 0.76
MBD4O95243 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MBD4O95243 AC073439.1-201ENST00000624121 1774 ntBASIC19.83■□□□□ 0.76
MBD4O95243 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.82■□□□□ 0.76
MBD4O95243 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.82■□□□□ 0.76
MBD4O95243 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.82■□□□□ 0.76
MBD4O95243 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.82■□□□□ 0.76
MBD4O95243 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
MBD4O95243 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 MIR346-201ENST00000362234 95 ntBASIC19.82■□□□□ 0.76
MBD4O95243 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.82■□□□□ 0.76
MBD4O95243 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
MBD4O95243 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.82■□□□□ 0.76
MBD4O95243 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.82■□□□□ 0.76
MBD4O95243 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.82■□□□□ 0.76
MBD4O95243 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
MBD4O95243 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.82■□□□□ 0.76
MBD4O95243 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MBD4O95243 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.81■□□□□ 0.76
MBD4O95243 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.81■□□□□ 0.76
MBD4O95243 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
MBD4O95243 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 AGGF1P2-201ENST00000426656 2106 ntBASIC19.81■□□□□ 0.76
MBD4O95243 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
MBD4O95243 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.81■□□□□ 0.76
MBD4O95243 AC142381.1-201ENST00000426099 345 ntBASIC19.81■□□□□ 0.76
MBD4O95243 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.81■□□□□ 0.76
MBD4O95243 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.81■□□□□ 0.76
MBD4O95243 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.81■□□□□ 0.76
MBD4O95243 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 FOXO1B-201ENST00000504678 1527 ntBASIC19.81■□□□□ 0.76
MBD4O95243 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.81■□□□□ 0.76
MBD4O95243 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.81■□□□□ 0.76
MBD4O95243 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
MBD4O95243 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
MBD4O95243 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MBD4O95243 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
MBD4O95243 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
MBD4O95243 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
MBD4O95243 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
MBD4O95243 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MBD4O95243 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MBD4O95243 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.8■□□□□ 0.76
MBD4O95243 RBPMS2P1-201ENST00000437762 623 ntBASIC19.8■□□□□ 0.76
MBD4O95243 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.8■□□□□ 0.76
MBD4O95243 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.8■□□□□ 0.76
MBD4O95243 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.8■□□□□ 0.76
MBD4O95243 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.8■□□□□ 0.76
MBD4O95243 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.8■□□□□ 0.76
MBD4O95243 AC105233.2-201ENST00000523697 349 ntBASIC19.8■□□□□ 0.76
MBD4O95243 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MBD4O95243 AF228730.5-201ENST00000530288 346 ntBASIC19.8■□□□□ 0.76
MBD4O95243 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MBD4O95243 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.8■□□□□ 0.76
MBD4O95243 AC004449.1-201ENST00000564240 433 ntBASIC19.8■□□□□ 0.76
MBD4O95243 AC027796.2-201ENST00000575326 344 ntBASIC19.8■□□□□ 0.76
MBD4O95243 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.8■□□□□ 0.76
MBD4O95243 AC073389.1-201ENST00000595595 795 ntBASIC19.8■□□□□ 0.76
MBD4O95243 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.8■□□□□ 0.76
MBD4O95243 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.8■□□□□ 0.76
MBD4O95243 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MBD4O95243 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MBD4O95243 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms