Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.65■□□□□ 0.58
MSH4O15457 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH4O15457 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.65■□□□□ 0.58
MSH4O15457 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
MSH4O15457 FOXO1B-201ENST00000504678 1527 ntBASIC18.64■□□□□ 0.58
MSH4O15457 UXT-AS1-201ENST00000590504 1525 ntBASIC18.64■□□□□ 0.58
MSH4O15457 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.64■□□□□ 0.58
MSH4O15457 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.64■□□□□ 0.58
MSH4O15457 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
MSH4O15457 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
MSH4O15457 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
MSH4O15457 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.64■□□□□ 0.57
MSH4O15457 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
MSH4O15457 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.64■□□□□ 0.57
MSH4O15457 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 GPS2P2-201ENST00000430745 888 ntBASIC18.64■□□□□ 0.57
MSH4O15457 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.64■□□□□ 0.57
MSH4O15457 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.64■□□□□ 0.57
MSH4O15457 PRYP6-201ENST00000514804 343 ntBASIC18.64■□□□□ 0.57
MSH4O15457 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.64■□□□□ 0.57
MSH4O15457 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 AC009093.7-201ENST00000623853 1223 ntBASIC18.64■□□□□ 0.57
MSH4O15457 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.64■□□□□ 0.57
MSH4O15457 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.64■□□□□ 0.57
MSH4O15457 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.64■□□□□ 0.57
MSH4O15457 PCGF3-213ENST00000620529 1899 ntBASIC18.64■□□□□ 0.57
MSH4O15457 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MSH4O15457 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
MSH4O15457 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
MSH4O15457 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH4O15457 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.64■□□□□ 0.57
MSH4O15457 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.63■□□□□ 0.57
MSH4O15457 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
MSH4O15457 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.63■□□□□ 0.57
MSH4O15457 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MSH4O15457 AC142381.1-201ENST00000426099 345 ntBASIC18.63■□□□□ 0.57
MSH4O15457 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.63■□□□□ 0.57
MSH4O15457 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 SLC25A39P2-201ENST00000537614 270 ntBASIC18.63■□□□□ 0.57
MSH4O15457 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.63■□□□□ 0.57
MSH4O15457 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.63■□□□□ 0.57
MSH4O15457 KRT18P28-201ENST00000453838 1332 ntBASIC18.63■□□□□ 0.57
MSH4O15457 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
MSH4O15457 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.63■□□□□ 0.57
MSH4O15457 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.63■□□□□ 0.57
MSH4O15457 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.63■□□□□ 0.57
MSH4O15457 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
MSH4O15457 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
MSH4O15457 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.63■□□□□ 0.57
MSH4O15457 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
MSH4O15457 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH4O15457 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
MSH4O15457 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
MSH4O15457 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
MSH4O15457 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.62■□□□□ 0.57
MSH4O15457 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.62■□□□□ 0.57
MSH4O15457 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
MSH4O15457 KRT18P32-201ENST00000424695 1287 ntBASIC18.62■□□□□ 0.57
MSH4O15457 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.62■□□□□ 0.57
MSH4O15457 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.62■□□□□ 0.57
MSH4O15457 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.62■□□□□ 0.57
MSH4O15457 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms