Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
SDCBPO00560 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.25□□□□□ -0.13
SDCBPO00560 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
SDCBPO00560 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SDCBPO00560 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SDCBPO00560 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.24□□□□□ -0.13
SDCBPO00560 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SDCBPO00560 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
SDCBPO00560 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SDCBPO00560 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.24□□□□□ -0.13
SDCBPO00560 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.24□□□□□ -0.13
SDCBPO00560 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC14.24□□□□□ -0.13
SDCBPO00560 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.24□□□□□ -0.13
SDCBPO00560 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.24□□□□□ -0.13
SDCBPO00560 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SDCBPO00560 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
SDCBPO00560 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.24□□□□□ -0.13
SDCBPO00560 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
SDCBPO00560 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
SDCBPO00560 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDCBPO00560 ME2P1-201ENST00000426028 1970 ntBASIC14.23□□□□□ -0.13
SDCBPO00560 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.23□□□□□ -0.13
SDCBPO00560 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 ABCD1P5-201ENST00000445663 754 ntBASIC14.23□□□□□ -0.13
SDCBPO00560 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.23□□□□□ -0.13
SDCBPO00560 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
SDCBPO00560 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.23□□□□□ -0.13
SDCBPO00560 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.23□□□□□ -0.13
SDCBPO00560 AP000867.4-201ENST00000641616 219 ntBASIC14.23□□□□□ -0.13
SDCBPO00560 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms