Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 HMGA1P5-201ENST00000412453 271 ntBASIC12.25□□□□□ -0.45
SMKR1H3BMG3 ECEL1P3-201ENST00000427961 737 ntBASIC12.25□□□□□ -0.45
SMKR1H3BMG3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 AP003733.1-201ENST00000491725 852 ntBASIC12.25□□□□□ -0.45
SMKR1H3BMG3 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 Z99916.2-201ENST00000604037 246 ntBASIC12.25□□□□□ -0.45
SMKR1H3BMG3 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
SMKR1H3BMG3 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 FAM201B-201ENST00000458407 597 ntBASIC12.24□□□□□ -0.45
SMKR1H3BMG3 HLA-J-202ENST00000469281 1241 ntBASIC12.24□□□□□ -0.45
SMKR1H3BMG3 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
SMKR1H3BMG3 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms