Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 NORAD-201ENST00000565493 5339 ntBASIC12.54□□□□□ -0.4
LINC00477Q96M19 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 AC138894.3-201ENST00000603787 634 ntBASIC12.54□□□□□ -0.4
LINC00477Q96M19 IGHV3OR16-7-201ENST00000604106 360 ntBASIC12.54□□□□□ -0.4
LINC00477Q96M19 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
LINC00477Q96M19 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00477Q96M19 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 GCK-202ENST00000345378 2421 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms