Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 AC138749.3-201ENST00000567691 622 ntBASIC17.97■□□□□ 0.47
LRCH3Q96II8 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 AC116165.1-201ENST00000611806 668 ntBASIC17.97■□□□□ 0.47
LRCH3Q96II8 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 AC008764.6-201ENST00000595909 2069 ntBASIC17.97■□□□□ 0.47
LRCH3Q96II8 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 CSF2RBP1-201ENST00000447905 391 ntBASIC17.96■□□□□ 0.47
LRCH3Q96II8 LDHBP1-201ENST00000455730 1119 ntBASIC17.96■□□□□ 0.47
LRCH3Q96II8 RN7SL618P-201ENST00000477850 296 ntBASIC17.96■□□□□ 0.47
LRCH3Q96II8 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.96■□□□□ 0.47
LRCH3Q96II8 AL512361.1-201ENST00000554200 418 ntBASIC17.96■□□□□ 0.47
LRCH3Q96II8 C2orf69P2-201ENST00000562032 1123 ntBASIC17.96■□□□□ 0.47
LRCH3Q96II8 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 AL033527.5-201ENST00000641382 801 ntBASIC17.96■□□□□ 0.47
LRCH3Q96II8 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.96■□□□□ 0.47
LRCH3Q96II8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LRCH3Q96II8 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.46
LRCH3Q96II8 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
LRCH3Q96II8 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 AL079307.3-201ENST00000556114 283 ntBASIC17.95■□□□□ 0.46
LRCH3Q96II8 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 SRD5A3P1-201ENST00000603021 949 ntBASIC17.95■□□□□ 0.46
LRCH3Q96II8 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LRCH3Q96II8 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
LRCH3Q96II8 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms