Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.17■□□□□ 0.18
CLIP3Q96DZ5 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.17■□□□□ 0.18
CLIP3Q96DZ5 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLIP3Q96DZ5 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CLIP3Q96DZ5 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLIP3Q96DZ5 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLIP3Q96DZ5 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLIP3Q96DZ5 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 AC254562.1-201ENST00000417586 456 ntBASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 ACTL9-202ENST00000612068 1252 ntBASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 AC091812.2-201ENST00000619081 385 ntBASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.16■□□□□ 0.18
CLIP3Q96DZ5 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 PMS2P2-201ENST00000425039 1128 ntBASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 ACTG1P14-201ENST00000446382 1122 ntBASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLIP3Q96DZ5 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms