Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLHC1Q8NHS4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 HLA-J-202ENST00000469281 1241 ntBASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 AC091304.2-201ENST00000564639 760 ntBASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 AC139887.3-201ENST00000568585 713 ntBASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 AC012313.10-201ENST00000623509 926 ntBASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CLHC1Q8NHS4 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 ME2P1-201ENST00000426028 1970 ntBASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 TOP3BP1-201ENST00000420768 1380 ntBASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 AKR1C7P-201ENST00000305623 895 ntBASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 ELK2BP-201ENST00000415014 1224 ntBASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 TSPY19P-201ENST00000418461 509 ntBASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 TSPY18P-201ENST00000441642 509 ntBASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 AC013467.2-201ENST00000605472 835 ntBASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 AL513523.2-202ENST00000427283 2040 ntBASIC16.06■□□□□ 0.16
CLHC1Q8NHS4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms