Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AL354751.1-201ENST00000412768 1863 ntBASIC11.43□□□□□ -0.58
CSMD3Q7Z407 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC11.43□□□□□ -0.58
CSMD3Q7Z407 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 RPL7P3-201ENST00000441388 714 ntBASIC11.43□□□□□ -0.58
CSMD3Q7Z407 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 MIR5189-201ENST00000577370 114 ntBASIC11.43□□□□□ -0.58
CSMD3Q7Z407 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CSMD3Q7Z407 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 KRT8P49-201ENST00000604166 1432 ntBASIC11.42□□□□□ -0.58
CSMD3Q7Z407 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 LINC01451-201ENST00000623792 534 ntBASIC11.42□□□□□ -0.58
CSMD3Q7Z407 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 MIR1247-201ENST00000408206 136 ntBASIC11.42□□□□□ -0.58
CSMD3Q7Z407 EMC4-209ENST00000559421 497 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 FO681548.1-201ENST00000455617 1132 ntBASIC11.42□□□□□ -0.58
CSMD3Q7Z407 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 RRP7BP-205ENST00000566851 833 ntBASIC11.42□□□□□ -0.58
CSMD3Q7Z407 BTNL10-201ENST00000595971 695 ntBASIC11.42□□□□□ -0.58
CSMD3Q7Z407 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC11.42□□□□□ -0.58
CSMD3Q7Z407 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC11.41□□□□□ -0.58
CSMD3Q7Z407 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
CSMD3Q7Z407 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CSMD3Q7Z407 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC11.41□□□□□ -0.58
CSMD3Q7Z407 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CSMD3Q7Z407 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CSMD3Q7Z407 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CSMD3Q7Z407 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
CSMD3Q7Z407 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms