Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 HNRNPA1P28-201ENST00000424481 961 ntBASIC18■□□□□ 0.47
KRT39Q6A163 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18■□□□□ 0.47
KRT39Q6A163 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18■□□□□ 0.47
KRT39Q6A163 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18■□□□□ 0.47
KRT39Q6A163 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18■□□□□ 0.47
KRT39Q6A163 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18■□□□□ 0.47
KRT39Q6A163 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18■□□□□ 0.47
KRT39Q6A163 AC021097.1-201ENST00000607902 574 ntBASIC18■□□□□ 0.47
KRT39Q6A163 MED16-214ENST00000617672 554 ntTSL 5 BASIC18■□□□□ 0.47
KRT39Q6A163 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
KRT39Q6A163 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
KRT39Q6A163 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 PCDHB19P-201ENST00000570871 2371 ntBASIC17.99■□□□□ 0.47
KRT39Q6A163 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
KRT39Q6A163 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.99■□□□□ 0.47
KRT39Q6A163 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
KRT39Q6A163 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.99■□□□□ 0.47
KRT39Q6A163 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
KRT39Q6A163 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.99■□□□□ 0.47
KRT39Q6A163 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.99■□□□□ 0.47
KRT39Q6A163 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
KRT39Q6A163 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.99■□□□□ 0.47
KRT39Q6A163 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.99■□□□□ 0.47
KRT39Q6A163 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.99■□□□□ 0.47
KRT39Q6A163 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
KRT39Q6A163 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
KRT39Q6A163 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
KRT39Q6A163 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
KRT39Q6A163 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.99■□□□□ 0.47
KRT39Q6A163 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.99■□□□□ 0.47
KRT39Q6A163 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
KRT39Q6A163 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.98■□□□□ 0.47
KRT39Q6A163 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
KRT39Q6A163 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.98■□□□□ 0.47
KRT39Q6A163 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
KRT39Q6A163 AC079328.2-201ENST00000561241 3354 ntBASIC17.98■□□□□ 0.47
KRT39Q6A163 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.98■□□□□ 0.47
KRT39Q6A163 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
KRT39Q6A163 AL022342.1-201ENST00000400363 863 ntBASIC17.98■□□□□ 0.47
KRT39Q6A163 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
KRT39Q6A163 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
KRT39Q6A163 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.98■□□□□ 0.47
KRT39Q6A163 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 AC109635.5-201ENST00000533593 962 ntBASIC17.98■□□□□ 0.47
KRT39Q6A163 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
KRT39Q6A163 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.98■□□□□ 0.47
KRT39Q6A163 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.98■□□□□ 0.47
KRT39Q6A163 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.98■□□□□ 0.47
KRT39Q6A163 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
KRT39Q6A163 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
KRT39Q6A163 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms