Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC14.95□□□□□ -0.02
SCN1BQ07699 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.95□□□□□ -0.02
SCN1BQ07699 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.95□□□□□ -0.02
SCN1BQ07699 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SCN1BQ07699 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.95□□□□□ -0.02
SCN1BQ07699 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SCN1BQ07699 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SCN1BQ07699 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCN1BQ07699 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.94□□□□□ -0.02
SCN1BQ07699 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
SCN1BQ07699 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.94□□□□□ -0.02
SCN1BQ07699 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.94□□□□□ -0.02
SCN1BQ07699 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.94□□□□□ -0.02
SCN1BQ07699 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.94□□□□□ -0.02
SCN1BQ07699 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC14.94□□□□□ -0.02
SCN1BQ07699 RN7SL850P-201ENST00000579959 291 ntBASIC14.94□□□□□ -0.02
SCN1BQ07699 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.94□□□□□ -0.02
SCN1BQ07699 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.94□□□□□ -0.02
SCN1BQ07699 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC14.94□□□□□ -0.02
SCN1BQ07699 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SCN1BQ07699 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.94□□□□□ -0.02
SCN1BQ07699 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.94□□□□□ -0.02
SCN1BQ07699 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
SCN1BQ07699 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SCN1BQ07699 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.94□□□□□ -0.02
SCN1BQ07699 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.94□□□□□ -0.02
SCN1BQ07699 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SCN1BQ07699 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCN1BQ07699 AL009178.2-201ENST00000597278 2719 ntBASIC14.94□□□□□ -0.02
SCN1BQ07699 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.93□□□□□ -0.02
SCN1BQ07699 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.93□□□□□ -0.02
SCN1BQ07699 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SCN1BQ07699 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.93□□□□□ -0.02
SCN1BQ07699 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.93□□□□□ -0.02
SCN1BQ07699 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
SCN1BQ07699 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
SCN1BQ07699 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.93□□□□□ -0.02
SCN1BQ07699 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.93□□□□□ -0.02
SCN1BQ07699 AC068472.1-201ENST00000474589 881 ntBASIC14.93□□□□□ -0.02
SCN1BQ07699 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 AP002490.2-201ENST00000524791 560 ntBASIC14.93□□□□□ -0.02
SCN1BQ07699 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.93□□□□□ -0.02
SCN1BQ07699 RNF126P1-202ENST00000569893 925 ntBASIC14.93□□□□□ -0.02
SCN1BQ07699 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.93□□□□□ -0.02
SCN1BQ07699 DFFB-212ENST00000625756 649 ntTSL 5 BASIC14.93□□□□□ -0.02
SCN1BQ07699 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
SCN1BQ07699 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.93□□□□□ -0.02
SCN1BQ07699 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SCN1BQ07699 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.93□□□□□ -0.02
SCN1BQ07699 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.93□□□□□ -0.02
SCN1BQ07699 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.93□□□□□ -0.02
SCN1BQ07699 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms