Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HMGCS1Q01581 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGCS1Q01581 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 GGT3P-204ENST00000453783 1664 ntBASIC16.11■□□□□ 0.17
HMGCS1Q01581 AC131009.4-201ENST00000624048 1740 ntBASIC16.11■□□□□ 0.17
HMGCS1Q01581 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 AL513523.2-202ENST00000427283 2040 ntBASIC16.11■□□□□ 0.17
HMGCS1Q01581 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 PMS2P1-201ENST00000431037 1228 ntBASIC16.11■□□□□ 0.17
HMGCS1Q01581 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 RN7SL510P-201ENST00000581311 263 ntBASIC16.11■□□□□ 0.17
HMGCS1Q01581 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 SLC22A20-204ENST00000530038 1673 ntBASIC16.11■□□□□ 0.17
HMGCS1Q01581 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HMGCS1Q01581 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGCS1Q01581 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 AC132872.4-202ENST00000622924 2756 ntBASIC16.1■□□□□ 0.17
HMGCS1Q01581 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 KRT18P27-201ENST00000427733 1299 ntBASIC16.1■□□□□ 0.17
HMGCS1Q01581 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 RPS15P9-201ENST00000494093 319 ntBASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms