Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPS8P6-201ENST00000426177 609 ntBASIC15.45■□□□□ 0.06
RNF4P78317 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.45■□□□□ 0.06
RNF4P78317 AP006288.1-201ENST00000446065 395 ntBASIC15.45■□□□□ 0.06
RNF4P78317 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.45■□□□□ 0.06
RNF4P78317 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.45■□□□□ 0.06
RNF4P78317 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
RNF4P78317 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.45■□□□□ 0.06
RNF4P78317 RARRES2P8-201ENST00000566335 367 ntBASIC15.45■□□□□ 0.06
RNF4P78317 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.45■□□□□ 0.06
RNF4P78317 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
RNF4P78317 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.45■□□□□ 0.06
RNF4P78317 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.45■□□□□ 0.06
RNF4P78317 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
RNF4P78317 AC079781.4-201ENST00000641908 219 ntBASIC15.45■□□□□ 0.06
RNF4P78317 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
RNF4P78317 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.45■□□□□ 0.06
RNF4P78317 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RNF4P78317 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
RNF4P78317 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
RNF4P78317 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.44■□□□□ 0.06
RNF4P78317 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 ADH5P3-201ENST00000433842 1137 ntBASIC15.44■□□□□ 0.06
RNF4P78317 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.44■□□□□ 0.06
RNF4P78317 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
RNF4P78317 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.44■□□□□ 0.06
RNF4P78317 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.44■□□□□ 0.06
RNF4P78317 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
RNF4P78317 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.44■□□□□ 0.06
RNF4P78317 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RNF4P78317 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.44■□□□□ 0.06
RNF4P78317 RNF216P1-203ENST00000404404 2427 ntBASIC15.44■□□□□ 0.06
RNF4P78317 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.44■□□□□ 0.06
RNF4P78317 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 AKAP8P1-201ENST00000434743 1349 ntBASIC15.43■□□□□ 0.06
RNF4P78317 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 WASH6P-202ENST00000359512 1437 ntBASIC15.43■□□□□ 0.06
RNF4P78317 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
RNF4P78317 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.43■□□□□ 0.06
RNF4P78317 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.43■□□□□ 0.06
RNF4P78317 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 TFAMP1-201ENST00000412727 736 ntBASIC15.43■□□□□ 0.06
RNF4P78317 AC254562.1-201ENST00000417586 456 ntBASIC15.43■□□□□ 0.06
RNF4P78317 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 DNAJB3-202ENST00000449667 1266 ntBASIC15.43■□□□□ 0.06
RNF4P78317 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.43■□□□□ 0.06
RNF4P78317 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.43■□□□□ 0.06
RNF4P78317 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.43■□□□□ 0.06
RNF4P78317 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 AC026120.1-201ENST00000611536 926 ntBASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms