Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIMK1P53667 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.44■□□□□ 0.22
LIMK1P53667 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIMK1P53667 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIMK1P53667 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.44■□□□□ 0.22
LIMK1P53667 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIMK1P53667 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.44■□□□□ 0.22
LIMK1P53667 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIMK1P53667 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIMK1P53667 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.44■□□□□ 0.22
LIMK1P53667 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIMK1P53667 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIMK1P53667 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
LIMK1P53667 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
LIMK1P53667 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.43■□□□□ 0.22
LIMK1P53667 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.43■□□□□ 0.22
LIMK1P53667 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.43■□□□□ 0.22
LIMK1P53667 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 DGCR5-201ENST00000399539 862 ntBASIC16.43■□□□□ 0.22
LIMK1P53667 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
LIMK1P53667 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 HCG4-201ENST00000418983 998 ntBASIC16.43■□□□□ 0.22
LIMK1P53667 AC112492.5-201ENST00000421897 457 ntBASIC16.43■□□□□ 0.22
LIMK1P53667 AC022210.1-201ENST00000449856 793 ntBASIC16.43■□□□□ 0.22
LIMK1P53667 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.43■□□□□ 0.22
LIMK1P53667 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 AC008738.7-201ENST00000609744 511 ntBASIC16.43■□□□□ 0.22
LIMK1P53667 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.43■□□□□ 0.22
LIMK1P53667 AL023806.1-201ENST00000603994 1649 ntBASIC16.43■□□□□ 0.22
LIMK1P53667 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.43■□□□□ 0.22
LIMK1P53667 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
LIMK1P53667 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.43■□□□□ 0.22
LIMK1P53667 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.43■□□□□ 0.22
LIMK1P53667 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIMK1P53667 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.42■□□□□ 0.22
LIMK1P53667 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 AL035456.1-201ENST00000456064 1369 ntBASIC16.42■□□□□ 0.22
LIMK1P53667 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.42■□□□□ 0.22
LIMK1P53667 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIMK1P53667 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
LIMK1P53667 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.42■□□□□ 0.22
LIMK1P53667 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
LIMK1P53667 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.42■□□□□ 0.22
LIMK1P53667 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.42■□□□□ 0.22
LIMK1P53667 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.42■□□□□ 0.22
LIMK1P53667 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.42■□□□□ 0.22
LIMK1P53667 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.42■□□□□ 0.22
LIMK1P53667 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.42■□□□□ 0.22
LIMK1P53667 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.42■□□□□ 0.22
LIMK1P53667 AC003101.2-201ENST00000612557 442 ntBASIC16.42■□□□□ 0.22
LIMK1P53667 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.42■□□□□ 0.22
LIMK1P53667 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.42■□□□□ 0.22
LIMK1P53667 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMK1P53667 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMK1P53667 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMK1P53667 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms