Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 AC008741.2-201ENST00000612792 3115 ntBASIC19.28■□□□□ 0.68
CTDNEP1O95476 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTDNEP1O95476 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CTDNEP1O95476 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 AC025580.3-201ENST00000617932 1424 ntBASIC19.27■□□□□ 0.68
CTDNEP1O95476 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 AL590627.1-203ENST00000421194 1026 ntBASIC19.27■□□□□ 0.68
CTDNEP1O95476 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 MIR3909-201ENST00000579518 119 ntBASIC19.27■□□□□ 0.68
CTDNEP1O95476 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 AC004877.2-201ENST00000623941 599 ntBASIC19.27■□□□□ 0.68
CTDNEP1O95476 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CTDNEP1O95476 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTDNEP1O95476 AC006449.6-201ENST00000612330 2296 ntBASIC19.27■□□□□ 0.68
CTDNEP1O95476 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTDNEP1O95476 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CTDNEP1O95476 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CTDNEP1O95476 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTDNEP1O95476 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 AC092919.2-201ENST00000623631 1645 ntBASIC19.26■□□□□ 0.67
CTDNEP1O95476 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTDNEP1O95476 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTDNEP1O95476 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTDNEP1O95476 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTDNEP1O95476 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTDNEP1O95476 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.26■□□□□ 0.67
CTDNEP1O95476 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTDNEP1O95476 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.25■□□□□ 0.67
CTDNEP1O95476 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CTDNEP1O95476 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTDNEP1O95476 PMS2P4-201ENST00000412466 1052 ntBASIC19.25■□□□□ 0.67
CTDNEP1O95476 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms