Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.73□□□□□ -0.05
LMX1BO60663 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.73□□□□□ -0.05
LMX1BO60663 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.73□□□□□ -0.05
LMX1BO60663 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LMX1BO60663 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
LMX1BO60663 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.72□□□□□ -0.05
LMX1BO60663 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
LMX1BO60663 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 NFIC-211ENST00000641145 8399 ntBASIC14.72□□□□□ -0.05
LMX1BO60663 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.72□□□□□ -0.05
LMX1BO60663 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.72□□□□□ -0.05
LMX1BO60663 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 YBX2P1-201ENST00000394192 760 ntBASIC14.72□□□□□ -0.05
LMX1BO60663 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 PMS2P2-201ENST00000425039 1128 ntBASIC14.72□□□□□ -0.05
LMX1BO60663 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.72□□□□□ -0.05
LMX1BO60663 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 HS6ST1P1-201ENST00000481504 1234 ntBASIC14.72□□□□□ -0.05
LMX1BO60663 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.72□□□□□ -0.05
LMX1BO60663 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 MTDHP4-201ENST00000600287 670 ntBASIC14.72□□□□□ -0.05
LMX1BO60663 AC025062.2-201ENST00000605477 670 ntBASIC14.72□□□□□ -0.05
LMX1BO60663 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.72□□□□□ -0.05
LMX1BO60663 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.72□□□□□ -0.05
LMX1BO60663 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
LMX1BO60663 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LMX1BO60663 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.71□□□□□ -0.05
LMX1BO60663 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LMX1BO60663 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LMX1BO60663 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
LMX1BO60663 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
LMX1BO60663 AC079776.2-201ENST00000641154 1609 ntBASIC14.71□□□□□ -0.05
LMX1BO60663 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 AP002414.1-201ENST00000391405 1147 ntBASIC14.71□□□□□ -0.05
LMX1BO60663 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
LMX1BO60663 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.71□□□□□ -0.05
LMX1BO60663 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.71□□□□□ -0.05
LMX1BO60663 BX005266.1-201ENST00000473402 457 ntBASIC14.71□□□□□ -0.05
LMX1BO60663 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
LMX1BO60663 AC112482.1-201ENST00000492080 688 ntBASIC14.71□□□□□ -0.05
LMX1BO60663 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.71□□□□□ -0.05
LMX1BO60663 NKAPP1-205ENST00000585790 367 ntBASIC14.71□□□□□ -0.05
LMX1BO60663 AP001160.2-201ENST00000596071 487 ntBASIC14.71□□□□□ -0.05
LMX1BO60663 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.71□□□□□ -0.05
LMX1BO60663 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 SIGLEC16-201ENST00000599858 1437 ntBASIC14.71□□□□□ -0.05
LMX1BO60663 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.71□□□□□ -0.05
LMX1BO60663 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.71□□□□□ -0.05
LMX1BO60663 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.71□□□□□ -0.05
LMX1BO60663 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
LMX1BO60663 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LMX1BO60663 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.71□□□□□ -0.05
LMX1BO60663 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
LMX1BO60663 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
LMX1BO60663 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC14.71□□□□□ -0.06
LMX1BO60663 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
LMX1BO60663 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
LMX1BO60663 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.71□□□□□ -0.06
LMX1BO60663 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LMX1BO60663 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
LMX1BO60663 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms