Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC241585.1-201ENST00000433527 519 ntBASIC16.91■□□□□ 0.3
HOXC11O43248 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXC11O43248 AC002472.2-201ENST00000442739 958 ntBASIC16.91■□□□□ 0.3
HOXC11O43248 AL512638.1-201ENST00000457493 794 ntBASIC16.91■□□□□ 0.3
HOXC11O43248 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.91■□□□□ 0.3
HOXC11O43248 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXC11O43248 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC11O43248 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXC11O43248 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
HOXC11O43248 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.91■□□□□ 0.3
HOXC11O43248 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC11O43248 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC11O43248 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HOXC11O43248 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXC11O43248 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HOXC11O43248 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXC11O43248 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXC11O43248 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
HOXC11O43248 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXC11O43248 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 AL035456.1-201ENST00000456064 1369 ntBASIC16.9■□□□□ 0.3
HOXC11O43248 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
HOXC11O43248 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXC11O43248 AC084018.2-201ENST00000613093 2607 ntBASIC16.9■□□□□ 0.3
HOXC11O43248 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HOXC11O43248 MIR661-201ENST00000384842 89 ntBASIC16.9■□□□□ 0.3
HOXC11O43248 AC236430.1-201ENST00000402231 743 ntBASIC16.9■□□□□ 0.3
HOXC11O43248 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXC11O43248 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXC11O43248 HLA-V-204ENST00000476601 1289 ntBASIC16.9■□□□□ 0.3
HOXC11O43248 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXC11O43248 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HOXC11O43248 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.9■□□□□ 0.3
HOXC11O43248 RN7SL204P-201ENST00000582831 262 ntBASIC16.9■□□□□ 0.3
HOXC11O43248 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXC11O43248 SPDYE12P-201ENST00000618416 771 ntBASIC16.9■□□□□ 0.3
HOXC11O43248 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXC11O43248 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.9■□□□□ 0.3
HOXC11O43248 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXC11O43248 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.9■□□□□ 0.3
HOXC11O43248 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
HOXC11O43248 PCDHA12-202ENST00000613593 2588 ntBASIC16.89■□□□□ 0.3
HOXC11O43248 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXC11O43248 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXC11O43248 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC11O43248 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC11O43248 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
HOXC11O43248 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC11O43248 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.89■□□□□ 0.29
HOXC11O43248 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC11O43248 AL353705.2-201ENST00000428243 662 ntBASIC16.89■□□□□ 0.29
HOXC11O43248 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.89■□□□□ 0.29
HOXC11O43248 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXC11O43248 AC004890.2-204ENST00000481968 304 ntBASIC16.89■□□□□ 0.29
HOXC11O43248 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HOXC11O43248 TERF1P3-201ENST00000505638 1227 ntBASIC16.89■□□□□ 0.29
HOXC11O43248 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.89■□□□□ 0.29
HOXC11O43248 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.89■□□□□ 0.29
HOXC11O43248 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.89■□□□□ 0.29
HOXC11O43248 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC11O43248 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.89■□□□□ 0.29
HOXC11O43248 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXC11O43248 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXC11O43248 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXC11O43248 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXC11O43248 AL512652.2-201ENST00000625156 1716 ntBASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms