Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.27□□□□□ -0.13
SDCBPO00560 AC138894.3-201ENST00000603787 634 ntBASIC14.27□□□□□ -0.13
SDCBPO00560 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.27□□□□□ -0.13
SDCBPO00560 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SDCBPO00560 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.27□□□□□ -0.13
SDCBPO00560 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 AL365203.3-201ENST00000609742 2057 ntBASIC14.27□□□□□ -0.13
SDCBPO00560 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.27□□□□□ -0.13
SDCBPO00560 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.27□□□□□ -0.13
SDCBPO00560 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SDCBPO00560 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.26□□□□□ -0.13
SDCBPO00560 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.26□□□□□ -0.13
SDCBPO00560 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.26□□□□□ -0.13
SDCBPO00560 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
SDCBPO00560 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 UPK3BP1-201ENST00000428678 509 ntBASIC14.26□□□□□ -0.13
SDCBPO00560 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.26□□□□□ -0.13
SDCBPO00560 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SDCBPO00560 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.26□□□□□ -0.13
SDCBPO00560 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
SDCBPO00560 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.26□□□□□ -0.13
SDCBPO00560 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.26□□□□□ -0.13
SDCBPO00560 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 PMPCAP1-201ENST00000508114 1576 ntBASIC14.26□□□□□ -0.13
SDCBPO00560 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SDCBPO00560 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.25□□□□□ -0.13
SDCBPO00560 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 AC103702.1-201ENST00000548801 2630 ntBASIC14.25□□□□□ -0.13
SDCBPO00560 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SDCBPO00560 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.25□□□□□ -0.13
SDCBPO00560 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 AL020989.1-201ENST00000422979 469 ntBASIC14.25□□□□□ -0.13
SDCBPO00560 SIGLEC30P-201ENST00000455569 941 ntBASIC14.25□□□□□ -0.13
SDCBPO00560 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.25□□□□□ -0.13
SDCBPO00560 MIR5100-201ENST00000579544 119 ntBASIC14.25□□□□□ -0.13
SDCBPO00560 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC14.25□□□□□ -0.13
SDCBPO00560 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.25□□□□□ -0.13
SDCBPO00560 AL591684.3-201ENST00000605187 298 ntBASIC14.25□□□□□ -0.13
SDCBPO00560 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SDCBPO00560 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.25□□□□□ -0.13
SDCBPO00560 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.25□□□□□ -0.13
SDCBPO00560 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms