Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 AC092068.3-201ENST00000587894 2016 ntBASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 AL139400.1-201ENST00000366220 510 ntBASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 AL355306.1-201ENST00000415580 579 ntBASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 SPDYE11-202ENST00000450699 704 ntBASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 FAM86C2P-203ENST00000528684 1004 ntBASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 SPDYE9P-201ENST00000570642 692 ntBASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 SPDYE10P-202ENST00000612005 668 ntBASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 SPDYE8P-202ENST00000612377 668 ntBASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.21■□□□□ 0.03
NPIPA3F8WFD2 AC020916.1-201ENST00000587762 1774 ntBASIC15.21■□□□□ 0.02
NPIPA3F8WFD2 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NPIPA3F8WFD2 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
NPIPA3F8WFD2 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
NPIPA3F8WFD2 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NPIPA3F8WFD2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
NPIPA3F8WFD2 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 TUBB8P12-201ENST00000308911 1335 ntBASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 TUBB7P-202ENST00000428444 1305 ntBASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 TUBB8P7-204ENST00000567960 1332 ntBASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 HMGA1P7-201ENST00000406908 502 ntBASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 AC023141.5-201ENST00000458585 616 ntBASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 AC099522.2-201ENST00000607001 744 ntBASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NPIPA3F8WFD2 AC080080.1-201ENST00000625121 2420 ntBASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NPIPA3F8WFD2 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms