Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COMMD3-BMI1R4GMX3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
COMMD3-BMI1R4GMX3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COMMD3-BMI1R4GMX3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.24■■□□□ 1.15
COMMD3-BMI1R4GMX3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COMMD3-BMI1R4GMX3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.24■■□□□ 1.15
COMMD3-BMI1R4GMX3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
COMMD3-BMI1R4GMX3 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COMMD3-BMI1R4GMX3 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
COMMD3-BMI1R4GMX3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COMMD3-BMI1R4GMX3 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
COMMD3-BMI1R4GMX3 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COMMD3-BMI1R4GMX3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COMMD3-BMI1R4GMX3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC22.21■■□□□ 1.15
COMMD3-BMI1R4GMX3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COMMD3-BMI1R4GMX3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COMMD3-BMI1R4GMX3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COMMD3-BMI1R4GMX3 AL117328.2-201ENST00000624617 1940 ntBASIC22.2■■□□□ 1.14
COMMD3-BMI1R4GMX3 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COMMD3-BMI1R4GMX3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COMMD3-BMI1R4GMX3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COMMD3-BMI1R4GMX3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC22.2■■□□□ 1.14
COMMD3-BMI1R4GMX3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COMMD3-BMI1R4GMX3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
COMMD3-BMI1R4GMX3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
COMMD3-BMI1R4GMX3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
COMMD3-BMI1R4GMX3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COMMD3-BMI1R4GMX3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COMMD3-BMI1R4GMX3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 AC110285.7-201ENST00000624417 1536 ntBASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COMMD3-BMI1R4GMX3 LINC01124-201ENST00000409786 2117 ntBASIC22.15■■□□□ 1.14
COMMD3-BMI1R4GMX3 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COMMD3-BMI1R4GMX3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC22.15■■□□□ 1.14
COMMD3-BMI1R4GMX3 AC021231.2-201ENST00000594613 730 ntBASIC22.15■■□□□ 1.14
COMMD3-BMI1R4GMX3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.15■■□□□ 1.14
COMMD3-BMI1R4GMX3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COMMD3-BMI1R4GMX3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
COMMD3-BMI1R4GMX3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COMMD3-BMI1R4GMX3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
COMMD3-BMI1R4GMX3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
COMMD3-BMI1R4GMX3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
COMMD3-BMI1R4GMX3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COMMD3-BMI1R4GMX3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
COMMD3-BMI1R4GMX3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC22.14■■□□□ 1.13
COMMD3-BMI1R4GMX3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COMMD3-BMI1R4GMX3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
COMMD3-BMI1R4GMX3 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COMMD3-BMI1R4GMX3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COMMD3-BMI1R4GMX3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COMMD3-BMI1R4GMX3 AC142472.1-201ENST00000612013 1741 ntBASIC22.13■■□□□ 1.13
COMMD3-BMI1R4GMX3 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
COMMD3-BMI1R4GMX3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 LINC00565-201ENST00000562710 2331 ntBASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.12■■□□□ 1.13
COMMD3-BMI1R4GMX3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms