Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
PCDHA11Q9Y5I1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
PCDHA11Q9Y5I1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.18■■□□□ 1.78
PCDHA11Q9Y5I1 AC110285.6-201ENST00000617652 491 ntBASIC26.18■■□□□ 1.78
PCDHA11Q9Y5I1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.18■■□□□ 1.78
PCDHA11Q9Y5I1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PCDHA11Q9Y5I1 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.17■■□□□ 1.78
PCDHA11Q9Y5I1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.17■■□□□ 1.78
PCDHA11Q9Y5I1 AC005837.3-201ENST00000612163 286 ntBASIC26.17■■□□□ 1.78
PCDHA11Q9Y5I1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PCDHA11Q9Y5I1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.17■■□□□ 1.78
PCDHA11Q9Y5I1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PCDHA11Q9Y5I1 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA11Q9Y5I1 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA11Q9Y5I1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
PCDHA11Q9Y5I1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.16■■□□□ 1.78
PCDHA11Q9Y5I1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
PCDHA11Q9Y5I1 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
PCDHA11Q9Y5I1 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA11Q9Y5I1 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA11Q9Y5I1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.15■■□□□ 1.78
PCDHA11Q9Y5I1 AC120024.1-201ENST00000562672 995 ntBASIC26.15■■□□□ 1.78
PCDHA11Q9Y5I1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.15■■□□□ 1.78
PCDHA11Q9Y5I1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHA11Q9Y5I1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHA11Q9Y5I1 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHA11Q9Y5I1 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PCDHA11Q9Y5I1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.14■■□□□ 1.78
PCDHA11Q9Y5I1 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
PCDHA11Q9Y5I1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA11Q9Y5I1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA11Q9Y5I1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.13■■□□□ 1.77
PCDHA11Q9Y5I1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
PCDHA11Q9Y5I1 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA11Q9Y5I1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHA11Q9Y5I1 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHA11Q9Y5I1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.12■■□□□ 1.77
PCDHA11Q9Y5I1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
PCDHA11Q9Y5I1 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
PCDHA11Q9Y5I1 AL117332.1-201ENST00000622628 974 ntBASIC26.12■■□□□ 1.77
PCDHA11Q9Y5I1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA11Q9Y5I1 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA11Q9Y5I1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.11■■□□□ 1.77
PCDHA11Q9Y5I1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.1■■□□□ 1.77
PCDHA11Q9Y5I1 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.1■■□□□ 1.77
PCDHA11Q9Y5I1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA11Q9Y5I1 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA11Q9Y5I1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.1■■□□□ 1.77
PCDHA11Q9Y5I1 MIR3621-201ENST00000580529 85 ntBASIC26.1■■□□□ 1.77
PCDHA11Q9Y5I1 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA11Q9Y5I1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA11Q9Y5I1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.08■■□□□ 1.77
PCDHA11Q9Y5I1 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.08■■□□□ 1.77
PCDHA11Q9Y5I1 AC133561.4-201ENST00000566112 224 ntBASIC26.08■■□□□ 1.77
PCDHA11Q9Y5I1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.08■■□□□ 1.77
PCDHA11Q9Y5I1 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.76
PCDHA11Q9Y5I1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
PCDHA11Q9Y5I1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHA11Q9Y5I1 AC096631.2-201ENST00000436136 790 ntBASIC26.07■■□□□ 1.76
PCDHA11Q9Y5I1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.07■■□□□ 1.76
PCDHA11Q9Y5I1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHA11Q9Y5I1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA11Q9Y5I1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA11Q9Y5I1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA11Q9Y5I1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.06■■□□□ 1.76
PCDHA11Q9Y5I1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.06■■□□□ 1.76
PCDHA11Q9Y5I1 AC010997.5-201ENST00000609182 354 ntBASIC26.06■■□□□ 1.76
PCDHA11Q9Y5I1 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA11Q9Y5I1 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.06■■□□□ 1.76
PCDHA11Q9Y5I1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 MIR6724-1-201ENST00000616420 92 ntBASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 MIR6724-2-201ENST00000616483 92 ntBASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 MIR6724-4-201ENST00000617390 92 ntBASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 MIR6724-3-201ENST00000622482 92 ntBASIC26.05■■□□□ 1.76
PCDHA11Q9Y5I1 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA11Q9Y5I1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.03■■□□□ 1.76
PCDHA11Q9Y5I1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHA11Q9Y5I1 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms