Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
PCDHGA1Q9Y5H4 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
PCDHGA1Q9Y5H4 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
PCDHGA1Q9Y5H4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
PCDHGA1Q9Y5H4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.14■■□□□ 1.29
PCDHGA1Q9Y5H4 MIR4281-201ENST00000580852 62 ntBASIC23.14■■□□□ 1.29
PCDHGA1Q9Y5H4 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDHGA1Q9Y5H4 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PCDHGA1Q9Y5H4 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
PCDHGA1Q9Y5H4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
PCDHGA1Q9Y5H4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.13■■□□□ 1.29
PCDHGA1Q9Y5H4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.13■■□□□ 1.29
PCDHGA1Q9Y5H4 MIR3621-201ENST00000580529 85 ntBASIC23.13■■□□□ 1.29
PCDHGA1Q9Y5H4 AL117332.1-201ENST00000622628 974 ntBASIC23.13■■□□□ 1.29
PCDHGA1Q9Y5H4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PCDHGA1Q9Y5H4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
PCDHGA1Q9Y5H4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.12■■□□□ 1.29
PCDHGA1Q9Y5H4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC23.12■■□□□ 1.29
PCDHGA1Q9Y5H4 AC010997.5-201ENST00000609182 354 ntBASIC23.12■■□□□ 1.29
PCDHGA1Q9Y5H4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.12■■□□□ 1.29
PCDHGA1Q9Y5H4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
PCDHGA1Q9Y5H4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHGA1Q9Y5H4 MIR6724-1-201ENST00000616420 92 ntBASIC23.11■■□□□ 1.29
PCDHGA1Q9Y5H4 MIR6724-2-201ENST00000616483 92 ntBASIC23.11■■□□□ 1.29
PCDHGA1Q9Y5H4 MIR6724-4-201ENST00000617390 92 ntBASIC23.11■■□□□ 1.29
PCDHGA1Q9Y5H4 MIR6724-3-201ENST00000622482 92 ntBASIC23.11■■□□□ 1.29
PCDHGA1Q9Y5H4 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
PCDHGA1Q9Y5H4 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHGA1Q9Y5H4 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHGA1Q9Y5H4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHGA1Q9Y5H4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
PCDHGA1Q9Y5H4 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.09■■□□□ 1.29
PCDHGA1Q9Y5H4 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA1Q9Y5H4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.08■■□□□ 1.29
PCDHGA1Q9Y5H4 MTDHP2-201ENST00000601468 714 ntBASIC23.08■■□□□ 1.29
PCDHGA1Q9Y5H4 AL356740.2-201ENST00000601559 647 ntBASIC23.08■■□□□ 1.29
PCDHGA1Q9Y5H4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.08■■□□□ 1.29
PCDHGA1Q9Y5H4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.08■■□□□ 1.29
PCDHGA1Q9Y5H4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
PCDHGA1Q9Y5H4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA1Q9Y5H4 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PCDHGA1Q9Y5H4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
PCDHGA1Q9Y5H4 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
PCDHGA1Q9Y5H4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PCDHGA1Q9Y5H4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA1Q9Y5H4 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA1Q9Y5H4 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA1Q9Y5H4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.07■■□□□ 1.28
PCDHGA1Q9Y5H4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.07■■□□□ 1.28
PCDHGA1Q9Y5H4 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA1Q9Y5H4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.07■■□□□ 1.28
PCDHGA1Q9Y5H4 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA1Q9Y5H4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA1Q9Y5H4 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA1Q9Y5H4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC23.06■■□□□ 1.28
PCDHGA1Q9Y5H4 AC110285.6-201ENST00000617652 491 ntBASIC23.06■■□□□ 1.28
PCDHGA1Q9Y5H4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.06■■□□□ 1.28
PCDHGA1Q9Y5H4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA1Q9Y5H4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA1Q9Y5H4 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 AC133561.4-201ENST00000566112 224 ntBASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 AC011551.1-201ENST00000614101 683 ntBASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 BX255925.1-201ENST00000566954 1854 ntBASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.05■■□□□ 1.28
PCDHGA1Q9Y5H4 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 AC005837.3-201ENST00000612163 286 ntBASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA1Q9Y5H4 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.03■■□□□ 1.28
PCDHGA1Q9Y5H4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms