Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA2Q9Y261 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
FOXA2Q9Y261 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.26■□□□□ 0.67
FOXA2Q9Y261 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA2Q9Y261 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA2Q9Y261 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA2Q9Y261 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA2Q9Y261 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA2Q9Y261 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA2Q9Y261 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA2Q9Y261 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
FOXA2Q9Y261 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA2Q9Y261 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA2Q9Y261 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 SMPD5-203ENST00000639008 1464 ntBASIC19.24■□□□□ 0.67
FOXA2Q9Y261 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA2Q9Y261 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA2Q9Y261 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA2Q9Y261 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA2Q9Y261 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA2Q9Y261 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA2Q9Y261 AL139125.2-201ENST00000623134 1869 ntBASIC19.22■□□□□ 0.67
FOXA2Q9Y261 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA2Q9Y261 RARRES2P2-201ENST00000394842 485 ntBASIC19.22■□□□□ 0.67
FOXA2Q9Y261 AC025884.2-201ENST00000553429 711 ntBASIC19.22■□□□□ 0.67
FOXA2Q9Y261 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA2Q9Y261 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.22■□□□□ 0.67
FOXA2Q9Y261 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA2Q9Y261 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA2Q9Y261 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.21■□□□□ 0.67
FOXA2Q9Y261 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXA2Q9Y261 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA2Q9Y261 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA2Q9Y261 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA2Q9Y261 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 MIR3960-201ENST00000583311 91 ntBASIC19.2■□□□□ 0.66
FOXA2Q9Y261 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA2Q9Y261 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.19■□□□□ 0.66
FOXA2Q9Y261 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.19■□□□□ 0.66
FOXA2Q9Y261 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.19■□□□□ 0.66
FOXA2Q9Y261 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.19■□□□□ 0.66
FOXA2Q9Y261 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.19■□□□□ 0.66
FOXA2Q9Y261 AC097639.1-201ENST00000565519 1891 ntBASIC19.19■□□□□ 0.66
FOXA2Q9Y261 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA2Q9Y261 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA2Q9Y261 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA2Q9Y261 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA2Q9Y261 AC007029.1-201ENST00000604183 313 ntBASIC19.18■□□□□ 0.66
FOXA2Q9Y261 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA2Q9Y261 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
FOXA2Q9Y261 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA2Q9Y261 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXA2Q9Y261 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA2Q9Y261 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA2Q9Y261 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA2Q9Y261 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA2Q9Y261 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA2Q9Y261 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA2Q9Y261 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA2Q9Y261 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA2Q9Y261 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
FOXA2Q9Y261 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA2Q9Y261 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.15■□□□□ 0.66
FOXA2Q9Y261 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA2Q9Y261 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXA2Q9Y261 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA2Q9Y261 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXA2Q9Y261 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXA2Q9Y261 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
FOXA2Q9Y261 AP003733.4-201ENST00000623785 1697 ntBASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms