Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX56Q9NY93 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX56Q9NY93 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
DDX56Q9NY93 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX56Q9NY93 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
DDX56Q9NY93 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX56Q9NY93 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.86■■□□□ 1.57
DDX56Q9NY93 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX56Q9NY93 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX56Q9NY93 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX56Q9NY93 AC093536.1-201ENST00000569153 554 ntBASIC24.85■■□□□ 1.57
DDX56Q9NY93 MBP-237ENST00000579129 1052 ntTSL 5 BASIC24.85■■□□□ 1.57
DDX56Q9NY93 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX56Q9NY93 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.84■■□□□ 1.57
DDX56Q9NY93 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
DDX56Q9NY93 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.84■■□□□ 1.57
DDX56Q9NY93 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX56Q9NY93 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX56Q9NY93 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX56Q9NY93 AC007029.1-201ENST00000604183 313 ntBASIC24.84■■□□□ 1.57
DDX56Q9NY93 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
DDX56Q9NY93 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX56Q9NY93 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX56Q9NY93 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX56Q9NY93 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC24.83■■□□□ 1.56
DDX56Q9NY93 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX56Q9NY93 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
DDX56Q9NY93 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX56Q9NY93 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.82■■□□□ 1.56
DDX56Q9NY93 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
DDX56Q9NY93 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
DDX56Q9NY93 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DDX56Q9NY93 SLC6A10P-202ENST00000431994 2058 ntBASIC24.81■■□□□ 1.56
DDX56Q9NY93 GPX1-201ENST00000419349 1106 ntBASIC24.81■■□□□ 1.56
DDX56Q9NY93 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.81■■□□□ 1.56
DDX56Q9NY93 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
DDX56Q9NY93 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
DDX56Q9NY93 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
DDX56Q9NY93 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
DDX56Q9NY93 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
DDX56Q9NY93 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.81■■□□□ 1.56
DDX56Q9NY93 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
DDX56Q9NY93 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.8■■□□□ 1.56
DDX56Q9NY93 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.8■■□□□ 1.56
DDX56Q9NY93 GFER-205ENST00000569451 517 ntTSL 5 BASIC24.8■■□□□ 1.56
DDX56Q9NY93 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.8■■□□□ 1.56
DDX56Q9NY93 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
DDX56Q9NY93 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
DDX56Q9NY93 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.79■■□□□ 1.56
DDX56Q9NY93 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX56Q9NY93 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX56Q9NY93 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.79■■□□□ 1.56
DDX56Q9NY93 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC24.79■■□□□ 1.56
DDX56Q9NY93 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC24.79■■□□□ 1.56
DDX56Q9NY93 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.79■■□□□ 1.56
DDX56Q9NY93 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.79■■□□□ 1.56
DDX56Q9NY93 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX56Q9NY93 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX56Q9NY93 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
DDX56Q9NY93 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
DDX56Q9NY93 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
DDX56Q9NY93 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
DDX56Q9NY93 AC093323.1-202ENST00000635031 2045 ntBASIC24.78■■□□□ 1.56
DDX56Q9NY93 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
DDX56Q9NY93 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
DDX56Q9NY93 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
DDX56Q9NY93 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.78■■□□□ 1.56
DDX56Q9NY93 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
DDX56Q9NY93 AP003733.4-201ENST00000623785 1697 ntBASIC24.78■■□□□ 1.56
DDX56Q9NY93 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
DDX56Q9NY93 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
DDX56Q9NY93 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
DDX56Q9NY93 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
DDX56Q9NY93 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
DDX56Q9NY93 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
DDX56Q9NY93 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
DDX56Q9NY93 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
DDX56Q9NY93 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
DDX56Q9NY93 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
DDX56Q9NY93 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
DDX56Q9NY93 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
DDX56Q9NY93 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
DDX56Q9NY93 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.76■■□□□ 1.55
DDX56Q9NY93 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
DDX56Q9NY93 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.76■■□□□ 1.55
DDX56Q9NY93 AL139125.2-201ENST00000623134 1869 ntBASIC24.76■■□□□ 1.55
DDX56Q9NY93 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
DDX56Q9NY93 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
DDX56Q9NY93 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.76■■□□□ 1.55
DDX56Q9NY93 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
DDX56Q9NY93 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC24.75■■□□□ 1.55
DDX56Q9NY93 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
DDX56Q9NY93 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC24.75■■□□□ 1.55
DDX56Q9NY93 RAP2CP1-202ENST00000605179 643 ntBASIC24.74■■□□□ 1.55
DDX56Q9NY93 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.74■■□□□ 1.55
DDX56Q9NY93 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
DDX56Q9NY93 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
DDX56Q9NY93 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.74■■□□□ 1.55
DDX56Q9NY93 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
DDX56Q9NY93 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms