Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC25.89■■□□□ 1.73
RC3H2Q9HBD1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RC3H2Q9HBD1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.88■■□□□ 1.73
RC3H2Q9HBD1 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.88■■□□□ 1.73
RC3H2Q9HBD1 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RC3H2Q9HBD1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC25.88■■□□□ 1.73
RC3H2Q9HBD1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H2Q9HBD1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H2Q9HBD1 MIR4281-201ENST00000580852 62 ntBASIC25.87■■□□□ 1.73
RC3H2Q9HBD1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.87■■□□□ 1.73
RC3H2Q9HBD1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H2Q9HBD1 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
RC3H2Q9HBD1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.86■■□□□ 1.73
RC3H2Q9HBD1 AC131281.2-201ENST00000520478 145 ntBASIC25.86■■□□□ 1.73
RC3H2Q9HBD1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
RC3H2Q9HBD1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
RC3H2Q9HBD1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.84■■□□□ 1.73
RC3H2Q9HBD1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
RC3H2Q9HBD1 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RC3H2Q9HBD1 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H2Q9HBD1 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC25.83■■□□□ 1.73
RC3H2Q9HBD1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.83■■□□□ 1.73
RC3H2Q9HBD1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RC3H2Q9HBD1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.83■■□□□ 1.72
RC3H2Q9HBD1 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
RC3H2Q9HBD1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.83■■□□□ 1.72
RC3H2Q9HBD1 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.83■■□□□ 1.72
RC3H2Q9HBD1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RC3H2Q9HBD1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.82■■□□□ 1.72
RC3H2Q9HBD1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RC3H2Q9HBD1 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
RC3H2Q9HBD1 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RC3H2Q9HBD1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC25.81■■□□□ 1.72
RC3H2Q9HBD1 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
RC3H2Q9HBD1 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
RC3H2Q9HBD1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.81■■□□□ 1.72
RC3H2Q9HBD1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.81■■□□□ 1.72
RC3H2Q9HBD1 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
RC3H2Q9HBD1 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RC3H2Q9HBD1 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
RC3H2Q9HBD1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
RC3H2Q9HBD1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.8■■□□□ 1.72
RC3H2Q9HBD1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.8■■□□□ 1.72
RC3H2Q9HBD1 AL139246.5-201ENST00000606645 996 ntBASIC25.8■■□□□ 1.72
RC3H2Q9HBD1 AC139426.1-201ENST00000568218 2529 ntBASIC25.8■■□□□ 1.72
RC3H2Q9HBD1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
RC3H2Q9HBD1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.79■■□□□ 1.72
RC3H2Q9HBD1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.79■■□□□ 1.72
RC3H2Q9HBD1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.79■■□□□ 1.72
RC3H2Q9HBD1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
RC3H2Q9HBD1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.78■■□□□ 1.72
RC3H2Q9HBD1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.78■■□□□ 1.72
RC3H2Q9HBD1 AL117332.1-201ENST00000622628 974 ntBASIC25.78■■□□□ 1.72
RC3H2Q9HBD1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
RC3H2Q9HBD1 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
RC3H2Q9HBD1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.77■■□□□ 1.72
RC3H2Q9HBD1 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.77■■□□□ 1.72
RC3H2Q9HBD1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC25.77■■□□□ 1.72
RC3H2Q9HBD1 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
RC3H2Q9HBD1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
RC3H2Q9HBD1 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
RC3H2Q9HBD1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25.76■■□□□ 1.71
RC3H2Q9HBD1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
RC3H2Q9HBD1 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
RC3H2Q9HBD1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.76■■□□□ 1.71
RC3H2Q9HBD1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
RC3H2Q9HBD1 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.76■■□□□ 1.71
RC3H2Q9HBD1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
RC3H2Q9HBD1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
RC3H2Q9HBD1 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
RC3H2Q9HBD1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.75■■□□□ 1.71
RC3H2Q9HBD1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
RC3H2Q9HBD1 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.75■■□□□ 1.71
RC3H2Q9HBD1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.75■■□□□ 1.71
RC3H2Q9HBD1 AC011551.1-201ENST00000614101 683 ntBASIC25.75■■□□□ 1.71
RC3H2Q9HBD1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 MIR3621-201ENST00000580529 85 ntBASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
RC3H2Q9HBD1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.73■■□□□ 1.71
RC3H2Q9HBD1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
RC3H2Q9HBD1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
RC3H2Q9HBD1 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.73■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms