Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
LRRC40Q9H9A6 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
LRRC40Q9H9A6 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
LRRC40Q9H9A6 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
LRRC40Q9H9A6 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRRC40Q9H9A6 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRRC40Q9H9A6 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
LRRC40Q9H9A6 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRRC40Q9H9A6 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC24.24■■□□□ 1.47
LRRC40Q9H9A6 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
LRRC40Q9H9A6 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
LRRC40Q9H9A6 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
LRRC40Q9H9A6 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
LRRC40Q9H9A6 AC142381.3-201ENST00000568208 1670 ntBASIC24.23■■□□□ 1.47
LRRC40Q9H9A6 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
LRRC40Q9H9A6 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRRC40Q9H9A6 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRRC40Q9H9A6 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 RNF126P1-201ENST00000567452 1320 ntBASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 RAP2CP1-202ENST00000605179 643 ntBASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
LRRC40Q9H9A6 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LRRC40Q9H9A6 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LRRC40Q9H9A6 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LRRC40Q9H9A6 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LRRC40Q9H9A6 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.21■■□□□ 1.47
LRRC40Q9H9A6 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC24.2■■□□□ 1.47
LRRC40Q9H9A6 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
LRRC40Q9H9A6 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
LRRC40Q9H9A6 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.2■■□□□ 1.46
LRRC40Q9H9A6 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
LRRC40Q9H9A6 AC022211.4-201ENST00000625094 2161 ntBASIC24.19■■□□□ 1.46
LRRC40Q9H9A6 AC026202.3-201ENST00000600805 1127 ntBASIC24.19■■□□□ 1.46
LRRC40Q9H9A6 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
LRRC40Q9H9A6 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
LRRC40Q9H9A6 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRC40Q9H9A6 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRC40Q9H9A6 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
LRRC40Q9H9A6 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRC40Q9H9A6 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC40Q9H9A6 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC40Q9H9A6 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC24.17■■□□□ 1.46
LRRC40Q9H9A6 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRRC40Q9H9A6 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.17■■□□□ 1.46
LRRC40Q9H9A6 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC40Q9H9A6 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC40Q9H9A6 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC40Q9H9A6 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC40Q9H9A6 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC40Q9H9A6 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC40Q9H9A6 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC40Q9H9A6 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRC40Q9H9A6 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC40Q9H9A6 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC40Q9H9A6 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC40Q9H9A6 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRC40Q9H9A6 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.15■■□□□ 1.46
LRRC40Q9H9A6 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.14■■□□□ 1.46
LRRC40Q9H9A6 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.14■■□□□ 1.46
LRRC40Q9H9A6 HES4-204ENST00000484667 667 ntTSL 3 BASIC24.14■■□□□ 1.45
LRRC40Q9H9A6 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC24.14■■□□□ 1.45
LRRC40Q9H9A6 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
LRRC40Q9H9A6 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC40Q9H9A6 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC40Q9H9A6 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC40Q9H9A6 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC40Q9H9A6 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LRRC40Q9H9A6 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 AC009831.1-201ENST00000580420 1582 ntBASIC24.12■■□□□ 1.45
LRRC40Q9H9A6 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 AC138932.3-201ENST00000567634 1902 ntBASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRRC40Q9H9A6 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRRC40Q9H9A6 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
LRRC40Q9H9A6 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LRRC40Q9H9A6 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRRC40Q9H9A6 SLC6A10P-202ENST00000431994 2058 ntBASIC24.1■■□□□ 1.45
LRRC40Q9H9A6 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.09■■□□□ 1.45
LRRC40Q9H9A6 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRC40Q9H9A6 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms