Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.04■■□□□ 1.6
TTC28Q96AY4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
TTC28Q96AY4 ABHD17AP1-201ENST00000358206 933 ntBASIC25.03■■□□□ 1.6
TTC28Q96AY4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
TTC28Q96AY4 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
TTC28Q96AY4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
TTC28Q96AY4 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.03■■□□□ 1.6
TTC28Q96AY4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC25.02■■□□□ 1.6
TTC28Q96AY4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
TTC28Q96AY4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC25.02■■□□□ 1.6
TTC28Q96AY4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
TTC28Q96AY4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
TTC28Q96AY4 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.02■■□□□ 1.6
TTC28Q96AY4 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.02■■□□□ 1.6
TTC28Q96AY4 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC25.02■■□□□ 1.6
TTC28Q96AY4 RASA4CP-201ENST00000424092 1398 ntBASIC25.01■■□□□ 1.59
TTC28Q96AY4 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.01■■□□□ 1.59
TTC28Q96AY4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
TTC28Q96AY4 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.01■■□□□ 1.59
TTC28Q96AY4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.01■■□□□ 1.59
TTC28Q96AY4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
TTC28Q96AY4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.01■■□□□ 1.59
TTC28Q96AY4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.01■■□□□ 1.59
TTC28Q96AY4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
TTC28Q96AY4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC25■■□□□ 1.59
TTC28Q96AY4 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25■■□□□ 1.59
TTC28Q96AY4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
TTC28Q96AY4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25■■□□□ 1.59
TTC28Q96AY4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25■■□□□ 1.59
TTC28Q96AY4 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
TTC28Q96AY4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
TTC28Q96AY4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
TTC28Q96AY4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
TTC28Q96AY4 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC24.99■■□□□ 1.59
TTC28Q96AY4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.99■■□□□ 1.59
TTC28Q96AY4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
TTC28Q96AY4 AC066615.1-201ENST00000640911 628 ntBASIC24.98■■□□□ 1.59
TTC28Q96AY4 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
TTC28Q96AY4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.98■■□□□ 1.59
TTC28Q96AY4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
TTC28Q96AY4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.97■■□□□ 1.59
TTC28Q96AY4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
TTC28Q96AY4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC24.97■■□□□ 1.59
TTC28Q96AY4 GRAMD4P4-201ENST00000613563 1115 ntBASIC24.97■■□□□ 1.59
TTC28Q96AY4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
TTC28Q96AY4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.97■■□□□ 1.59
TTC28Q96AY4 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.96■■□□□ 1.59
TTC28Q96AY4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC24.96■■□□□ 1.59
TTC28Q96AY4 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
TTC28Q96AY4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
TTC28Q96AY4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
TTC28Q96AY4 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
TTC28Q96AY4 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
TTC28Q96AY4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.96■■□□□ 1.59
TTC28Q96AY4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
TTC28Q96AY4 AL359504.2-201ENST00000605506 1601 ntBASIC24.96■■□□□ 1.59
TTC28Q96AY4 WHAMMP3-201ENST00000611636 1609 ntBASIC24.96■■□□□ 1.59
TTC28Q96AY4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
TTC28Q96AY4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
TTC28Q96AY4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC24.95■■□□□ 1.59
TTC28Q96AY4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.95■■□□□ 1.59
TTC28Q96AY4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
TTC28Q96AY4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.95■■□□□ 1.58
TTC28Q96AY4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.95■■□□□ 1.58
TTC28Q96AY4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
TTC28Q96AY4 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
TTC28Q96AY4 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
TTC28Q96AY4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
TTC28Q96AY4 SLC47A1P1-202ENST00000449666 945 ntBASIC24.94■■□□□ 1.58
TTC28Q96AY4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
TTC28Q96AY4 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
TTC28Q96AY4 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
TTC28Q96AY4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
TTC28Q96AY4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
TTC28Q96AY4 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TTC28Q96AY4 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC24.93■■□□□ 1.58
TTC28Q96AY4 MAG-206ENST00000597035 542 ntTSL 4 BASIC24.93■■□□□ 1.58
TTC28Q96AY4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
TTC28Q96AY4 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
TTC28Q96AY4 AC100797.4-201ENST00000631653 1827 ntBASIC24.92■■□□□ 1.58
TTC28Q96AY4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
TTC28Q96AY4 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
TTC28Q96AY4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
TTC28Q96AY4 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
TTC28Q96AY4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
TTC28Q96AY4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC24.91■■□□□ 1.58
TTC28Q96AY4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
TTC28Q96AY4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC24.91■■□□□ 1.58
TTC28Q96AY4 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.9■■□□□ 1.58
TTC28Q96AY4 AL135925.1-201ENST00000605920 1701 ntBASIC24.9■■□□□ 1.58
TTC28Q96AY4 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC24.9■■□□□ 1.58
TTC28Q96AY4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.89■■□□□ 1.58
TTC28Q96AY4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC24.89■■□□□ 1.58
TTC28Q96AY4 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.57
TTC28Q96AY4 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
TTC28Q96AY4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.57
TTC28Q96AY4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.57
TTC28Q96AY4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
TTC28Q96AY4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.88■■□□□ 1.57
TTC28Q96AY4 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms