Protein–RNA interactions for Protein: Q8WVM8

SCFD1, Sec1 family domain-containing protein 1, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1Q8WVM8 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SCFD1Q8WVM8 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.35■■□□□ 1.81
SCFD1Q8WVM8 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
SCFD1Q8WVM8 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SCFD1Q8WVM8 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SCFD1Q8WVM8 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.34■■□□□ 1.81
SCFD1Q8WVM8 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
SCFD1Q8WVM8 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCFD1Q8WVM8 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SCFD1Q8WVM8 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCFD1Q8WVM8 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCFD1Q8WVM8 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCFD1Q8WVM8 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCFD1Q8WVM8 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 AL592293.1-201ENST00000502889 1188 ntBASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SCFD1Q8WVM8 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.33■■□□□ 1.8
SCFD1Q8WVM8 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SCFD1Q8WVM8 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
SCFD1Q8WVM8 U85056.1-201ENST00000616429 682 ntBASIC26.32■■□□□ 1.8
SCFD1Q8WVM8 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SCFD1Q8WVM8 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SCFD1Q8WVM8 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.32■■□□□ 1.8
SCFD1Q8WVM8 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCFD1Q8WVM8 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCFD1Q8WVM8 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.3■■□□□ 1.8
SCFD1Q8WVM8 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SCFD1Q8WVM8 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCFD1Q8WVM8 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.3■■□□□ 1.8
SCFD1Q8WVM8 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
SCFD1Q8WVM8 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SCFD1Q8WVM8 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.29■■□□□ 1.8
SCFD1Q8WVM8 SPCS2P3-201ENST00000500401 656 ntBASIC26.29■■□□□ 1.8
SCFD1Q8WVM8 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
SCFD1Q8WVM8 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.29■■□□□ 1.8
SCFD1Q8WVM8 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCFD1Q8WVM8 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SCFD1Q8WVM8 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
SCFD1Q8WVM8 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCFD1Q8WVM8 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SCFD1Q8WVM8 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.26■■□□□ 1.79
SCFD1Q8WVM8 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
SCFD1Q8WVM8 AC022211.4-201ENST00000625094 2161 ntBASIC26.26■■□□□ 1.79
SCFD1Q8WVM8 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
SCFD1Q8WVM8 SLC6A10P-202ENST00000431994 2058 ntBASIC26.25■■□□□ 1.79
SCFD1Q8WVM8 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCFD1Q8WVM8 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
SCFD1Q8WVM8 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SCFD1Q8WVM8 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SCFD1Q8WVM8 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SCFD1Q8WVM8 ABHD17AP5-201ENST00000580133 923 ntBASIC26.24■■□□□ 1.79
SCFD1Q8WVM8 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC26.24■■□□□ 1.79
SCFD1Q8WVM8 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SCFD1Q8WVM8 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SCFD1Q8WVM8 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC26.23■■□□□ 1.79
SCFD1Q8WVM8 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCFD1Q8WVM8 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCFD1Q8WVM8 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCFD1Q8WVM8 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SCFD1Q8WVM8 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SCFD1Q8WVM8 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SCFD1Q8WVM8 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.22■■□□□ 1.79
SCFD1Q8WVM8 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 KRT18P60-201ENST00000312876 1297 ntBASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.21■■□□□ 1.79
SCFD1Q8WVM8 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
SCFD1Q8WVM8 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
SCFD1Q8WVM8 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SCFD1Q8WVM8 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC26.2■■□□□ 1.78
SCFD1Q8WVM8 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
SCFD1Q8WVM8 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
SCFD1Q8WVM8 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.78
SCFD1Q8WVM8 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SCFD1Q8WVM8 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SCFD1Q8WVM8 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.19■■□□□ 1.78
SCFD1Q8WVM8 AC142381.3-201ENST00000568208 1670 ntBASIC26.19■■□□□ 1.78
SCFD1Q8WVM8 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SCFD1Q8WVM8 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms