Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
VRK3Q8IV63 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
VRK3Q8IV63 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
VRK3Q8IV63 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
VRK3Q8IV63 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
VRK3Q8IV63 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
VRK3Q8IV63 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.42■■□□□ 1.34
VRK3Q8IV63 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.42■■□□□ 1.34
VRK3Q8IV63 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
VRK3Q8IV63 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC23.42■■□□□ 1.34
VRK3Q8IV63 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC23.42■■□□□ 1.34
VRK3Q8IV63 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
VRK3Q8IV63 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
VRK3Q8IV63 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
VRK3Q8IV63 AC018755.3-202ENST00000596210 929 ntBASIC23.41■■□□□ 1.34
VRK3Q8IV63 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
VRK3Q8IV63 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.41■■□□□ 1.34
VRK3Q8IV63 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
VRK3Q8IV63 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.41■■□□□ 1.34
VRK3Q8IV63 AC097639.1-201ENST00000565519 1891 ntBASIC23.41■■□□□ 1.34
VRK3Q8IV63 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
VRK3Q8IV63 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
VRK3Q8IV63 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
VRK3Q8IV63 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
VRK3Q8IV63 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
VRK3Q8IV63 AC020928.2-201ENST00000588717 2197 ntBASIC23.4■■□□□ 1.34
VRK3Q8IV63 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.39■■□□□ 1.34
VRK3Q8IV63 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.34
VRK3Q8IV63 DUX4L18-201ENST00000553347 1267 ntBASIC23.39■■□□□ 1.33
VRK3Q8IV63 MIR6765-201ENST00000614092 87 ntBASIC23.39■■□□□ 1.33
VRK3Q8IV63 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
VRK3Q8IV63 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.39■■□□□ 1.33
VRK3Q8IV63 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
VRK3Q8IV63 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
VRK3Q8IV63 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
VRK3Q8IV63 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
VRK3Q8IV63 AC004987.1-201ENST00000428627 508 ntBASIC23.38■■□□□ 1.33
VRK3Q8IV63 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
VRK3Q8IV63 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
VRK3Q8IV63 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.38■■□□□ 1.33
VRK3Q8IV63 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
VRK3Q8IV63 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.38■■□□□ 1.33
VRK3Q8IV63 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
VRK3Q8IV63 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
VRK3Q8IV63 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
VRK3Q8IV63 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.37■■□□□ 1.33
VRK3Q8IV63 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
VRK3Q8IV63 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
VRK3Q8IV63 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.37■■□□□ 1.33
VRK3Q8IV63 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.36■■□□□ 1.33
VRK3Q8IV63 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
VRK3Q8IV63 ATP5G2P3-201ENST00000429083 425 ntBASIC23.36■■□□□ 1.33
VRK3Q8IV63 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC23.36■■□□□ 1.33
VRK3Q8IV63 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.36■■□□□ 1.33
VRK3Q8IV63 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
VRK3Q8IV63 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
VRK3Q8IV63 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
VRK3Q8IV63 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC23.35■■□□□ 1.33
VRK3Q8IV63 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
VRK3Q8IV63 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC23.35■■□□□ 1.33
VRK3Q8IV63 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.35■■□□□ 1.33
VRK3Q8IV63 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
VRK3Q8IV63 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
VRK3Q8IV63 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
VRK3Q8IV63 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
VRK3Q8IV63 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
VRK3Q8IV63 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.34■■□□□ 1.33
VRK3Q8IV63 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.34■■□□□ 1.33
VRK3Q8IV63 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
VRK3Q8IV63 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
VRK3Q8IV63 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.33
VRK3Q8IV63 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.33■■□□□ 1.33
VRK3Q8IV63 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
VRK3Q8IV63 RPS2P7-201ENST00000447334 885 ntBASIC23.33■■□□□ 1.33
VRK3Q8IV63 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
VRK3Q8IV63 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VRK3Q8IV63 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.32■■□□□ 1.32
VRK3Q8IV63 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.32■■□□□ 1.32
VRK3Q8IV63 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
VRK3Q8IV63 AC012354.3-201ENST00000623734 483 ntBASIC23.32■■□□□ 1.32
VRK3Q8IV63 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.32■■□□□ 1.32
VRK3Q8IV63 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VRK3Q8IV63 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC23.31■■□□□ 1.32
VRK3Q8IV63 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC23.31■■□□□ 1.32
VRK3Q8IV63 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VRK3Q8IV63 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
VRK3Q8IV63 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VRK3Q8IV63 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VRK3Q8IV63 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VRK3Q8IV63 TSPY13P-201ENST00000338964 914 ntBASIC23.3■■□□□ 1.32
VRK3Q8IV63 AL033527.3-201ENST00000566366 1196 ntBASIC23.3■■□□□ 1.32
VRK3Q8IV63 AC087393.1-201ENST00000582896 145 ntBASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 262.9 ms