Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 LINC01003-201ENST00000564834 1764 ntBASIC26.15■■□□□ 1.78
CNKSR3Q6P9H4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.15■■□□□ 1.78
CNKSR3Q6P9H4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC26.15■■□□□ 1.78
CNKSR3Q6P9H4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
CNKSR3Q6P9H4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CNKSR3Q6P9H4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
CNKSR3Q6P9H4 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.14■■□□□ 1.78
CNKSR3Q6P9H4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CNKSR3Q6P9H4 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.13■■□□□ 1.77
CNKSR3Q6P9H4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CNKSR3Q6P9H4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CNKSR3Q6P9H4 AC142472.1-201ENST00000612013 1741 ntBASIC26.12■■□□□ 1.77
CNKSR3Q6P9H4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.12■■□□□ 1.77
CNKSR3Q6P9H4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CNKSR3Q6P9H4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CNKSR3Q6P9H4 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CNKSR3Q6P9H4 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 AL136116.3-201ENST00000402907 1138 ntBASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 AL117332.1-201ENST00000622628 974 ntBASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.11■■□□□ 1.77
CNKSR3Q6P9H4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.1■■□□□ 1.77
CNKSR3Q6P9H4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.1■■□□□ 1.77
CNKSR3Q6P9H4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.1■■□□□ 1.77
CNKSR3Q6P9H4 AC010997.5-201ENST00000609182 354 ntBASIC26.1■■□□□ 1.77
CNKSR3Q6P9H4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CNKSR3Q6P9H4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.1■■□□□ 1.77
CNKSR3Q6P9H4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CNKSR3Q6P9H4 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CNKSR3Q6P9H4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CNKSR3Q6P9H4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.09■■□□□ 1.77
CNKSR3Q6P9H4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.09■■□□□ 1.77
CNKSR3Q6P9H4 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CNKSR3Q6P9H4 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CNKSR3Q6P9H4 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
CNKSR3Q6P9H4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
CNKSR3Q6P9H4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.08■■□□□ 1.77
CNKSR3Q6P9H4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.08■■□□□ 1.77
CNKSR3Q6P9H4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.08■■□□□ 1.77
CNKSR3Q6P9H4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.08■■□□□ 1.77
CNKSR3Q6P9H4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
CNKSR3Q6P9H4 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.08■■□□□ 1.76
CNKSR3Q6P9H4 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 MIR3621-201ENST00000580529 85 ntBASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 MIR6724-1-201ENST00000616420 92 ntBASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 MIR6724-2-201ENST00000616483 92 ntBASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 MIR6724-4-201ENST00000617390 92 ntBASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 MIR6724-3-201ENST00000622482 92 ntBASIC26.07■■□□□ 1.76
CNKSR3Q6P9H4 MTDHP2-201ENST00000601468 714 ntBASIC26.06■■□□□ 1.76
CNKSR3Q6P9H4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
CNKSR3Q6P9H4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
CNKSR3Q6P9H4 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
CNKSR3Q6P9H4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.05■■□□□ 1.76
CNKSR3Q6P9H4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
CNKSR3Q6P9H4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CNKSR3Q6P9H4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.05■■□□□ 1.76
CNKSR3Q6P9H4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CNKSR3Q6P9H4 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.04■■□□□ 1.76
CNKSR3Q6P9H4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
CNKSR3Q6P9H4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.04■■□□□ 1.76
CNKSR3Q6P9H4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CNKSR3Q6P9H4 AC011551.1-201ENST00000614101 683 ntBASIC26.04■■□□□ 1.76
CNKSR3Q6P9H4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.04■■□□□ 1.76
CNKSR3Q6P9H4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CNKSR3Q6P9H4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CNKSR3Q6P9H4 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CNKSR3Q6P9H4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.03■■□□□ 1.76
CNKSR3Q6P9H4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.03■■□□□ 1.76
CNKSR3Q6P9H4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CNKSR3Q6P9H4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CNKSR3Q6P9H4 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
CNKSR3Q6P9H4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
CNKSR3Q6P9H4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CNKSR3Q6P9H4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CNKSR3Q6P9H4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
CNKSR3Q6P9H4 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
CNKSR3Q6P9H4 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CNKSR3Q6P9H4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.01■■□□□ 1.75
CNKSR3Q6P9H4 AL356740.2-201ENST00000601559 647 ntBASIC26.01■■□□□ 1.75
CNKSR3Q6P9H4 AC110285.6-201ENST00000617652 491 ntBASIC26.01■■□□□ 1.75
CNKSR3Q6P9H4 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.01■■□□□ 1.75
CNKSR3Q6P9H4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26■■□□□ 1.75
CNKSR3Q6P9H4 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CNKSR3Q6P9H4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms