Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC28.21■■■□□ 2.11
SHROOM1Q2M3G4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC28.21■■■□□ 2.11
SHROOM1Q2M3G4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC28.21■■■□□ 2.11
SHROOM1Q2M3G4 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM1Q2M3G4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM1Q2M3G4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM1Q2M3G4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC28.21■■■□□ 2.11
SHROOM1Q2M3G4 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC28.2■■■□□ 2.11
SHROOM1Q2M3G4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC28.2■■■□□ 2.1
SHROOM1Q2M3G4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC28.2■■■□□ 2.1
SHROOM1Q2M3G4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
SHROOM1Q2M3G4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
SHROOM1Q2M3G4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM1Q2M3G4 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
SHROOM1Q2M3G4 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC28.19■■■□□ 2.1
SHROOM1Q2M3G4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM1Q2M3G4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC28.19■■■□□ 2.1
SHROOM1Q2M3G4 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM1Q2M3G4 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC28.18■■■□□ 2.1
SHROOM1Q2M3G4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.18■■■□□ 2.1
SHROOM1Q2M3G4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC28.18■■■□□ 2.1
SHROOM1Q2M3G4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM1Q2M3G4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM1Q2M3G4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC28.17■■■□□ 2.1
SHROOM1Q2M3G4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM1Q2M3G4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM1Q2M3G4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM1Q2M3G4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC28.16■■■□□ 2.1
SHROOM1Q2M3G4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
SHROOM1Q2M3G4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
SHROOM1Q2M3G4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM1Q2M3G4 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM1Q2M3G4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.15■■■□□ 2.1
SHROOM1Q2M3G4 AC120024.1-201ENST00000562672 995 ntBASIC28.15■■■□□ 2.1
SHROOM1Q2M3G4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM1Q2M3G4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC28.15■■■□□ 2.1
SHROOM1Q2M3G4 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM1Q2M3G4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM1Q2M3G4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC28.14■■■□□ 2.1
SHROOM1Q2M3G4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM1Q2M3G4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC28.14■■■□□ 2.1
SHROOM1Q2M3G4 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM1Q2M3G4 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
SHROOM1Q2M3G4 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
SHROOM1Q2M3G4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.09
SHROOM1Q2M3G4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM1Q2M3G4 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC28.13■■■□□ 2.09
SHROOM1Q2M3G4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC28.13■■■□□ 2.09
SHROOM1Q2M3G4 Z92544.1-202ENST00000571933 1220 ntBASIC28.13■■■□□ 2.09
SHROOM1Q2M3G4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM1Q2M3G4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM1Q2M3G4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC28.12■■■□□ 2.09
SHROOM1Q2M3G4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC28.12■■■□□ 2.09
SHROOM1Q2M3G4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC28.12■■■□□ 2.09
SHROOM1Q2M3G4 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC28.12■■■□□ 2.09
SHROOM1Q2M3G4 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 KRT18P24-201ENST00000344739 1156 ntBASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 KRT18P10-201ENST00000388836 1287 ntBASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC28.11■■■□□ 2.09
SHROOM1Q2M3G4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM1Q2M3G4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM1Q2M3G4 AC022616.5-201ENST00000518796 181 ntBASIC28.1■■■□□ 2.09
SHROOM1Q2M3G4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
SHROOM1Q2M3G4 UNC93B8-201ENST00000511903 705 ntBASIC28.09■■■□□ 2.09
SHROOM1Q2M3G4 MIR4787-201ENST00000607364 84 ntBASIC28.09■■■□□ 2.09
SHROOM1Q2M3G4 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM1Q2M3G4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM1Q2M3G4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM1Q2M3G4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM1Q2M3G4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 GRAMD4P7-201ENST00000578182 1232 ntBASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC28.07■■■□□ 2.08
SHROOM1Q2M3G4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
SHROOM1Q2M3G4 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM1Q2M3G4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC28.06■■■□□ 2.08
SHROOM1Q2M3G4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM1Q2M3G4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
SHROOM1Q2M3G4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM1Q2M3G4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM1Q2M3G4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM1Q2M3G4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHROOM1Q2M3G4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC28.05■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms