Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.78■■□□□ 1.4
LIMK1P53667 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.78■■□□□ 1.4
LIMK1P53667 MIR3621-201ENST00000580529 85 ntBASIC23.78■■□□□ 1.4
LIMK1P53667 AL117332.1-201ENST00000622628 974 ntBASIC23.78■■□□□ 1.4
LIMK1P53667 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
LIMK1P53667 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.77■■□□□ 1.4
LIMK1P53667 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.77■■□□□ 1.4
LIMK1P53667 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.77■■□□□ 1.4
LIMK1P53667 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.77■■□□□ 1.4
LIMK1P53667 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LIMK1P53667 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LIMK1P53667 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.76■■□□□ 1.39
LIMK1P53667 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LIMK1P53667 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LIMK1P53667 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LIMK1P53667 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.75■■□□□ 1.39
LIMK1P53667 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.75■■□□□ 1.39
LIMK1P53667 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LIMK1P53667 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LIMK1P53667 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
LIMK1P53667 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LIMK1P53667 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LIMK1P53667 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.74■■□□□ 1.39
LIMK1P53667 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.74■■□□□ 1.39
LIMK1P53667 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.74■■□□□ 1.39
LIMK1P53667 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LIMK1P53667 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LIMK1P53667 AL121749.1-202ENST00000609313 2153 ntBASIC23.74■■□□□ 1.39
LIMK1P53667 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
LIMK1P53667 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
LIMK1P53667 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.72■■□□□ 1.39
LIMK1P53667 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
LIMK1P53667 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
LIMK1P53667 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LIMK1P53667 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LIMK1P53667 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
LIMK1P53667 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LIMK1P53667 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LIMK1P53667 AP002414.2-202ENST00000590929 1450 ntBASIC23.71■■□□□ 1.39
LIMK1P53667 AC104564.3-201ENST00000582367 638 ntBASIC23.71■■□□□ 1.39
LIMK1P53667 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LIMK1P53667 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
LIMK1P53667 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
LIMK1P53667 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
LIMK1P53667 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
LIMK1P53667 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
LIMK1P53667 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
LIMK1P53667 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.7■■□□□ 1.38
LIMK1P53667 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.7■■□□□ 1.38
LIMK1P53667 MIR6724-1-201ENST00000616420 92 ntBASIC23.7■■□□□ 1.38
LIMK1P53667 MIR6724-2-201ENST00000616483 92 ntBASIC23.7■■□□□ 1.38
LIMK1P53667 MIR6724-4-201ENST00000617390 92 ntBASIC23.7■■□□□ 1.38
LIMK1P53667 MIR6724-3-201ENST00000622482 92 ntBASIC23.7■■□□□ 1.38
LIMK1P53667 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
LIMK1P53667 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LIMK1P53667 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LIMK1P53667 AC120024.1-201ENST00000562672 995 ntBASIC23.69■■□□□ 1.38
LIMK1P53667 AL356740.2-201ENST00000601559 647 ntBASIC23.69■■□□□ 1.38
LIMK1P53667 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
LIMK1P53667 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
LIMK1P53667 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
LIMK1P53667 WHAMMP3-201ENST00000611636 1609 ntBASIC23.68■■□□□ 1.38
LIMK1P53667 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.68■■□□□ 1.38
LIMK1P53667 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
LIMK1P53667 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
LIMK1P53667 AC135731.1-201ENST00000569415 2548 ntBASIC23.67■■□□□ 1.38
LIMK1P53667 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LIMK1P53667 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
LIMK1P53667 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
LIMK1P53667 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.67■■□□□ 1.38
LIMK1P53667 ZNRF2P3-201ENST00000424200 374 ntBASIC23.67■■□□□ 1.38
LIMK1P53667 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
LIMK1P53667 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
LIMK1P53667 AC010997.5-201ENST00000609182 354 ntBASIC23.67■■□□□ 1.38
LIMK1P53667 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
LIMK1P53667 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
LIMK1P53667 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.66■■□□□ 1.38
LIMK1P53667 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.66■■□□□ 1.38
LIMK1P53667 AC026271.2-201ENST00000428091 497 ntBASIC23.66■■□□□ 1.38
LIMK1P53667 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.66■■□□□ 1.38
LIMK1P53667 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.66■■□□□ 1.38
LIMK1P53667 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
LIMK1P53667 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
LIMK1P53667 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.65■■□□□ 1.38
LIMK1P53667 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LIMK1P53667 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
LIMK1P53667 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
LIMK1P53667 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.65■■□□□ 1.38
LIMK1P53667 MIR4466-201ENST00000606121 54 ntBASIC23.65■■□□□ 1.38
LIMK1P53667 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
LIMK1P53667 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.65■■□□□ 1.38
LIMK1P53667 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.64■■□□□ 1.38
LIMK1P53667 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.64■■□□□ 1.38
LIMK1P53667 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
LIMK1P53667 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.64■■□□□ 1.38
LIMK1P53667 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.64■■□□□ 1.37
LIMK1P53667 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LIMK1P53667 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
LIMK1P53667 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.64■■□□□ 1.37
LIMK1P53667 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms