Protein–RNA interactions for Protein: O60925

PFDN1, Prefoldin subunit 1, humanhuman

Predictions only

Length 122 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1O60925 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
PFDN1O60925 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PFDN1O60925 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.47■■□□□ 1.03
PFDN1O60925 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
PFDN1O60925 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PFDN1O60925 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.46■■□□□ 1.03
PFDN1O60925 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PFDN1O60925 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PFDN1O60925 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PFDN1O60925 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PFDN1O60925 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PFDN1O60925 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.45■■□□□ 1.02
PFDN1O60925 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
PFDN1O60925 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.45■■□□□ 1.02
PFDN1O60925 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PFDN1O60925 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PFDN1O60925 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PFDN1O60925 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.44■■□□□ 1.02
PFDN1O60925 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.44■■□□□ 1.02
PFDN1O60925 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PFDN1O60925 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.43■■□□□ 1.02
PFDN1O60925 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.43■■□□□ 1.02
PFDN1O60925 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PFDN1O60925 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PFDN1O60925 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PFDN1O60925 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.43■■□□□ 1.02
PFDN1O60925 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PFDN1O60925 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.43■■□□□ 1.02
PFDN1O60925 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PFDN1O60925 EP400NL-214ENST00000641289 2402 ntBASIC21.43■■□□□ 1.02
PFDN1O60925 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PFDN1O60925 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PFDN1O60925 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.42■■□□□ 1.02
PFDN1O60925 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PFDN1O60925 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
PFDN1O60925 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 AP004833.2-201ENST00000532228 1454 ntBASIC21.41■■□□□ 1.02
PFDN1O60925 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PFDN1O60925 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PFDN1O60925 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PFDN1O60925 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.41■■□□□ 1.02
PFDN1O60925 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.41■■□□□ 1.02
PFDN1O60925 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.4■■□□□ 1.02
PFDN1O60925 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PFDN1O60925 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.4■■□□□ 1.02
PFDN1O60925 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PFDN1O60925 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PFDN1O60925 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.4■■□□□ 1.02
PFDN1O60925 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PFDN1O60925 WHAMMP3-201ENST00000611636 1609 ntBASIC21.4■■□□□ 1.02
PFDN1O60925 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PFDN1O60925 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
PFDN1O60925 LINC01124-201ENST00000409786 2117 ntBASIC21.39■■□□□ 1.01
PFDN1O60925 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.01
PFDN1O60925 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PFDN1O60925 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
PFDN1O60925 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PFDN1O60925 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PFDN1O60925 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PFDN1O60925 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PFDN1O60925 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
PFDN1O60925 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PFDN1O60925 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PFDN1O60925 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
PFDN1O60925 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PFDN1O60925 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.38■■□□□ 1.01
PFDN1O60925 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PFDN1O60925 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PFDN1O60925 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PFDN1O60925 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
PFDN1O60925 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
PFDN1O60925 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PFDN1O60925 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.36■■□□□ 1.01
PFDN1O60925 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
PFDN1O60925 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
PFDN1O60925 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PFDN1O60925 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 2119.3 ms