Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
UPK1AO00322 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.67■■□□□ 1.22
UPK1AO00322 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
UPK1AO00322 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
UPK1AO00322 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
UPK1AO00322 GPX1-201ENST00000419349 1106 ntBASIC22.67■■□□□ 1.22
UPK1AO00322 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
UPK1AO00322 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.67■■□□□ 1.22
UPK1AO00322 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.67■■□□□ 1.22
UPK1AO00322 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.67■■□□□ 1.22
UPK1AO00322 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
UPK1AO00322 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.66■■□□□ 1.22
UPK1AO00322 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
UPK1AO00322 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
UPK1AO00322 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
UPK1AO00322 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.65■■□□□ 1.22
UPK1AO00322 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPK1AO00322 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPK1AO00322 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
UPK1AO00322 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
UPK1AO00322 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.64■■□□□ 1.21
UPK1AO00322 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.64■■□□□ 1.21
UPK1AO00322 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
UPK1AO00322 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
UPK1AO00322 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPK1AO00322 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
UPK1AO00322 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
UPK1AO00322 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.63■■□□□ 1.21
UPK1AO00322 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
UPK1AO00322 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPK1AO00322 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPK1AO00322 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPK1AO00322 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
UPK1AO00322 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPK1AO00322 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.63■■□□□ 1.21
UPK1AO00322 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
UPK1AO00322 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.62■■□□□ 1.21
UPK1AO00322 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
UPK1AO00322 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.62■■□□□ 1.21
UPK1AO00322 MIR3960-201ENST00000583311 91 ntBASIC22.62■■□□□ 1.21
UPK1AO00322 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.62■■□□□ 1.21
UPK1AO00322 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
UPK1AO00322 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
UPK1AO00322 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
UPK1AO00322 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.61■■□□□ 1.21
UPK1AO00322 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.61■■□□□ 1.21
UPK1AO00322 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
UPK1AO00322 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.61■■□□□ 1.21
UPK1AO00322 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
UPK1AO00322 HES4-202ENST00000428771 1040 ntTSL 2 BASIC22.61■■□□□ 1.21
UPK1AO00322 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
UPK1AO00322 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
UPK1AO00322 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
UPK1AO00322 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPK1AO00322 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.6■■□□□ 1.21
UPK1AO00322 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.6■■□□□ 1.21
UPK1AO00322 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPK1AO00322 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
UPK1AO00322 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
UPK1AO00322 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPK1AO00322 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
UPK1AO00322 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPK1AO00322 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPK1AO00322 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPK1AO00322 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.59■■□□□ 1.21
UPK1AO00322 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.58■■□□□ 1.21
UPK1AO00322 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
UPK1AO00322 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
UPK1AO00322 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
UPK1AO00322 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
UPK1AO00322 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
UPK1AO00322 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.58■■□□□ 1.21
UPK1AO00322 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
UPK1AO00322 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.58■■□□□ 1.2
UPK1AO00322 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK1AO00322 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK1AO00322 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK1AO00322 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK1AO00322 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK1AO00322 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.57■■□□□ 1.2
UPK1AO00322 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.57■■□□□ 1.2
UPK1AO00322 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK1AO00322 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
UPK1AO00322 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
UPK1AO00322 AC096887.2-201ENST00000623443 1957 ntBASIC22.56■■□□□ 1.2
UPK1AO00322 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
UPK1AO00322 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
UPK1AO00322 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.56■■□□□ 1.2
UPK1AO00322 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC22.56■■□□□ 1.2
UPK1AO00322 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC22.56■■□□□ 1.2
UPK1AO00322 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.56■■□□□ 1.2
UPK1AO00322 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.56■■□□□ 1.2
UPK1AO00322 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
UPK1AO00322 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
UPK1AO00322 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
UPK1AO00322 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
UPK1AO00322 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.55■■□□□ 1.2
UPK1AO00322 RP9P-202ENST00000450133 1212 ntBASIC22.55■■□□□ 1.2
UPK1AO00322 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.55■■□□□ 1.2
UPK1AO00322 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms