Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
RBFOX3A6NFN3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RBFOX3A6NFN3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RBFOX3A6NFN3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.83■□□□□ 0.61
RBFOX3A6NFN3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RBFOX3A6NFN3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
RBFOX3A6NFN3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
RBFOX3A6NFN3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
RBFOX3A6NFN3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RBFOX3A6NFN3 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
RBFOX3A6NFN3 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RBFOX3A6NFN3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RBFOX3A6NFN3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
RBFOX3A6NFN3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RBFOX3A6NFN3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
RBFOX3A6NFN3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RBFOX3A6NFN3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
RBFOX3A6NFN3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RBFOX3A6NFN3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.82■□□□□ 0.6
RBFOX3A6NFN3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RBFOX3A6NFN3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RBFOX3A6NFN3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RBFOX3A6NFN3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
RBFOX3A6NFN3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RBFOX3A6NFN3 AL117328.2-201ENST00000624617 1940 ntBASIC18.81■□□□□ 0.6
RBFOX3A6NFN3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC18.81■□□□□ 0.6
RBFOX3A6NFN3 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC18.81■□□□□ 0.6
RBFOX3A6NFN3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RBFOX3A6NFN3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.81■□□□□ 0.6
RBFOX3A6NFN3 AC141586.4-201ENST00000624558 1573 ntBASIC18.81■□□□□ 0.6
RBFOX3A6NFN3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RBFOX3A6NFN3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RBFOX3A6NFN3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RBFOX3A6NFN3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.79■□□□□ 0.6
RBFOX3A6NFN3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RBFOX3A6NFN3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RBFOX3A6NFN3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RBFOX3A6NFN3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
RBFOX3A6NFN3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RBFOX3A6NFN3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RBFOX3A6NFN3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RBFOX3A6NFN3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RBFOX3A6NFN3 C9orf163-202ENST00000624034 2573 ntBASIC18.77■□□□□ 0.6
RBFOX3A6NFN3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RBFOX3A6NFN3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC18.77■□□□□ 0.6
RBFOX3A6NFN3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RBFOX3A6NFN3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RBFOX3A6NFN3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
RBFOX3A6NFN3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RBFOX3A6NFN3 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
RBFOX3A6NFN3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RBFOX3A6NFN3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RBFOX3A6NFN3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RBFOX3A6NFN3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.76■□□□□ 0.59
RBFOX3A6NFN3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.76■□□□□ 0.59
RBFOX3A6NFN3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RBFOX3A6NFN3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.75■□□□□ 0.59
RBFOX3A6NFN3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
RBFOX3A6NFN3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.75■□□□□ 0.59
RBFOX3A6NFN3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
RBFOX3A6NFN3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.74■□□□□ 0.59
RBFOX3A6NFN3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
RBFOX3A6NFN3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RBFOX3A6NFN3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
RBFOX3A6NFN3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.74■□□□□ 0.59
RBFOX3A6NFN3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RBFOX3A6NFN3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RBFOX3A6NFN3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RBFOX3A6NFN3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RBFOX3A6NFN3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RBFOX3A6NFN3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RBFOX3A6NFN3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RBFOX3A6NFN3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RBFOX3A6NFN3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC18.73■□□□□ 0.59
RBFOX3A6NFN3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RBFOX3A6NFN3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RBFOX3A6NFN3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
RBFOX3A6NFN3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RBFOX3A6NFN3 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC18.72■□□□□ 0.59
RBFOX3A6NFN3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RBFOX3A6NFN3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.72■□□□□ 0.59
RBFOX3A6NFN3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RBFOX3A6NFN3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.71■□□□□ 0.59
RBFOX3A6NFN3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC18.71■□□□□ 0.59
RBFOX3A6NFN3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
RBFOX3A6NFN3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RBFOX3A6NFN3 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RBFOX3A6NFN3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RBFOX3A6NFN3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RBFOX3A6NFN3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms