Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 SLC25A6P5-201ENST00000435663 894 ntBASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 GIMAP3P-201ENST00000495150 836 ntBASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 MIR4492-201ENST00000581627 80 ntBASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 LINC00896-202ENST00000609602 2128 ntBASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA1Q9Y5H4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 RN7SL828P-201ENST00000607615 303 ntBASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 SPTSSB-204ENST00000617024 1292 ntBASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 FOXO1B-201ENST00000504678 1527 ntBASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA1Q9Y5H4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 AC016396.2-201ENST00000562575 1417 ntBASIC15.97■□□□□ 0.15
PCDHGA1Q9Y5H4 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms