Protein–RNA interactions for Protein: Q9ULT6

ZNRF3, E3 ubiquitin-protein ligase ZNRF3, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNRF3Q9ULT6 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.84■□□□□ 0.77
ZNRF3Q9ULT6 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNRF3Q9ULT6 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNRF3Q9ULT6 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNRF3Q9ULT6 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNRF3Q9ULT6 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNRF3Q9ULT6 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 HIST1H2BPS3-201ENST00000419683 341 ntBASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 KRT223P-202ENST00000449164 1292 ntBASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 ORC6-206ENST00000568364 888 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 WFDC1-204ENST00000613603 549 ntBASIC19.83■□□□□ 0.77
ZNRF3Q9ULT6 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 BCL2-203ENST00000589955 5011 ntBASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ZNRF3Q9ULT6 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 AC092552.1-201ENST00000547243 906 ntBASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 TMEM261P1-201ENST00000604899 340 ntBASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 AC133552.6-201ENST00000613406 534 ntBASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNRF3Q9ULT6 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 REXO1L6P-201ENST00000603433 1515 ntBASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 AC020763.4-201ENST00000623414 4170 ntBASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 AC245100.3-201ENST00000441281 285 ntBASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ZNRF3Q9ULT6 SNX29P1-201ENST00000548357 1007 ntBASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms