Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SIX4Q9UIU6 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX4Q9UIU6 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SIX4Q9UIU6 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX4Q9UIU6 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX4Q9UIU6 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SIX4Q9UIU6 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 AL627223.1-201ENST00000416693 442 ntBASIC17.79■□□□□ 0.44
SIX4Q9UIU6 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 SNHG9-202ENST00000564014 471 ntBASIC17.79■□□□□ 0.44
SIX4Q9UIU6 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 AC004835.2-201ENST00000603762 682 ntBASIC17.79■□□□□ 0.44
SIX4Q9UIU6 AC008267.7-201ENST00000624570 1194 ntBASIC17.79■□□□□ 0.44
SIX4Q9UIU6 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.79■□□□□ 0.44
SIX4Q9UIU6 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 FAM58DP-201ENST00000428076 619 ntBASIC17.78■□□□□ 0.44
SIX4Q9UIU6 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 AC027307.2-201ENST00000591252 911 ntBASIC17.78■□□□□ 0.44
SIX4Q9UIU6 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 AC084121.4-201ENST00000641598 221 ntBASIC17.78■□□□□ 0.44
SIX4Q9UIU6 AC079781.4-201ENST00000641908 219 ntBASIC17.78■□□□□ 0.44
SIX4Q9UIU6 AF228730.8-201ENST00000642140 221 ntBASIC17.78■□□□□ 0.44
SIX4Q9UIU6 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 AC073439.1-201ENST00000624121 1774 ntBASIC17.78■□□□□ 0.44
SIX4Q9UIU6 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX4Q9UIU6 FOXO1B-201ENST00000504678 1527 ntBASIC17.77■□□□□ 0.44
SIX4Q9UIU6 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms