Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.64■□□□□ 0.25
TREX1Q9NSU2 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 RHOQP3-201ENST00000437982 621 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 AL513480.1-201ENST00000451731 511 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 POU5F1P6-201ENST00000466990 990 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 AC079776.4-201ENST00000511039 504 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 AC096734.2-201ENST00000562054 433 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 AL031432.2-201ENST00000566714 459 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 AL928711.1-201ENST00000570165 459 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 Z83851.2-201ENST00000609564 659 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 AC020765.3-201ENST00000613051 740 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 AC010507.1-201ENST00000633895 436 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.63■□□□□ 0.25
TREX1Q9NSU2 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TREX1Q9NSU2 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 AC145285.3-201ENST00000564603 959 ntBASIC16.62■□□□□ 0.25
TREX1Q9NSU2 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.62■□□□□ 0.25
TREX1Q9NSU2 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 PCDHA1-201ENST00000378133 2726 ntBASIC16.62■□□□□ 0.25
TREX1Q9NSU2 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.62■□□□□ 0.25
TREX1Q9NSU2 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms