Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AD000864.1-201ENST00000624076 2295 ntBASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 AC092919.2-201ENST00000623631 1645 ntBASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.58■□□□□ 0.25
TRIM39Q9HCM9 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TRIM39Q9HCM9 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
TRIM39Q9HCM9 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRIM39Q9HCM9 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TRIM39Q9HCM9 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.58■□□□□ 0.25
TRIM39Q9HCM9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 AC002056.1-201ENST00000395613 760 ntBASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 HTR5BP-201ENST00000430851 1154 ntBASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 AC112191.1-201ENST00000523689 701 ntBASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.58■□□□□ 0.24
TRIM39Q9HCM9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 AL391256.1-201ENST00000443260 1855 ntBASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 MIR1233-2-201ENST00000408138 82 ntBASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 MIR1233-1-201ENST00000408722 82 ntBASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 FAM58CP-201ENST00000435741 640 ntBASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 ACTG1P14-201ENST00000446382 1122 ntBASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 AC091812.2-201ENST00000619081 385 ntBASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 AL645728.1-201ENST00000366221 2101 ntBASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM39Q9HCM9 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM39Q9HCM9 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms