Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 HLA-J-202ENST00000469281 1241 ntBASIC16.59■□□□□ 0.25
VPS35Q96QK1 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 AL009183.1-201ENST00000603760 355 ntBASIC16.59■□□□□ 0.25
VPS35Q96QK1 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.59■□□□□ 0.25
VPS35Q96QK1 C20orf181-201ENST00000623918 480 ntBASIC16.59■□□□□ 0.25
VPS35Q96QK1 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 KRT8P39-201ENST00000396270 1433 ntBASIC16.59■□□□□ 0.25
VPS35Q96QK1 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
VPS35Q96QK1 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.58■□□□□ 0.25
VPS35Q96QK1 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS35Q96QK1 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.58■□□□□ 0.25
VPS35Q96QK1 AC022211.2-201ENST00000585075 2527 ntBASIC16.58■□□□□ 0.25
VPS35Q96QK1 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS35Q96QK1 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS35Q96QK1 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS35Q96QK1 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 MKNK2P1-201ENST00000437526 628 ntBASIC16.58■□□□□ 0.24
VPS35Q96QK1 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 AC112191.1-201ENST00000523689 701 ntBASIC16.58■□□□□ 0.24
VPS35Q96QK1 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 AC092919.2-201ENST00000623631 1645 ntBASIC16.58■□□□□ 0.24
VPS35Q96QK1 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VPS35Q96QK1 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS35Q96QK1 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AC078925.2-201ENST00000624013 1973 ntBASIC16.57■□□□□ 0.24
VPS35Q96QK1 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AC002056.1-201ENST00000395613 760 ntBASIC16.57■□□□□ 0.24
VPS35Q96QK1 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS35Q96QK1 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS35Q96QK1 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms