Protein–RNA interactions for Protein: Q93008

USP9X, Probable ubiquitin carboxyl-terminal hydrolase FAF-X, humanhuman

Predicted RBP Predictions only

Length 2,570 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP9XQ93008 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP9XQ93008 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP9XQ93008 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC14.35□□□□□ -0.11
USP9XQ93008 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
USP9XQ93008 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
USP9XQ93008 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP9XQ93008 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.35□□□□□ -0.11
USP9XQ93008 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC14.35□□□□□ -0.11
USP9XQ93008 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.35□□□□□ -0.11
USP9XQ93008 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP9XQ93008 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.35□□□□□ -0.11
USP9XQ93008 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.35□□□□□ -0.11
USP9XQ93008 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC14.35□□□□□ -0.11
USP9XQ93008 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
USP9XQ93008 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP9XQ93008 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.35□□□□□ -0.11
USP9XQ93008 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.35□□□□□ -0.11
USP9XQ93008 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.35□□□□□ -0.11
USP9XQ93008 AC012317.2-201ENST00000623305 2251 ntBASIC14.35□□□□□ -0.11
USP9XQ93008 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP9XQ93008 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
USP9XQ93008 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
USP9XQ93008 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.34□□□□□ -0.11
USP9XQ93008 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.34□□□□□ -0.11
USP9XQ93008 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC14.34□□□□□ -0.11
USP9XQ93008 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 DUX4L45-201ENST00000566406 1057 ntBASIC14.34□□□□□ -0.11
USP9XQ93008 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.34□□□□□ -0.11
USP9XQ93008 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.34□□□□□ -0.11
USP9XQ93008 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
USP9XQ93008 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.34□□□□□ -0.11
USP9XQ93008 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.34□□□□□ -0.11
USP9XQ93008 FRMD8P1-201ENST00000440433 1524 ntBASIC14.34□□□□□ -0.11
USP9XQ93008 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
USP9XQ93008 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.34□□□□□ -0.11
USP9XQ93008 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.34□□□□□ -0.11
USP9XQ93008 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC14.34□□□□□ -0.11
USP9XQ93008 TOP3BP1-201ENST00000420768 1380 ntBASIC14.34□□□□□ -0.11
USP9XQ93008 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC14.34□□□□□ -0.11
USP9XQ93008 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC14.34□□□□□ -0.11
USP9XQ93008 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.34□□□□□ -0.11
USP9XQ93008 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
USP9XQ93008 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
USP9XQ93008 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP9XQ93008 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.11
USP9XQ93008 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.33□□□□□ -0.11
USP9XQ93008 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.33□□□□□ -0.11
USP9XQ93008 RPL17P11-201ENST00000417593 544 ntBASIC14.33□□□□□ -0.11
USP9XQ93008 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.33□□□□□ -0.11
USP9XQ93008 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USP9XQ93008 AC010328.2-201ENST00000597698 1111 ntBASIC14.33□□□□□ -0.11
USP9XQ93008 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
USP9XQ93008 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.33□□□□□ -0.11
USP9XQ93008 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
USP9XQ93008 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USP9XQ93008 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USP9XQ93008 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.33□□□□□ -0.11
USP9XQ93008 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.33□□□□□ -0.12
USP9XQ93008 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC14.33□□□□□ -0.12
USP9XQ93008 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 EGFEM1P-202ENST00000431685 1563 ntBASIC14.33□□□□□ -0.12
USP9XQ93008 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.33□□□□□ -0.12
USP9XQ93008 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
USP9XQ93008 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.33□□□□□ -0.12
USP9XQ93008 RNA5SP410-201ENST00000516285 106 ntBASIC14.33□□□□□ -0.12
USP9XQ93008 MIR3619-201ENST00000579667 83 ntBASIC14.33□□□□□ -0.12
USP9XQ93008 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.33□□□□□ -0.12
USP9XQ93008 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP9XQ93008 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms