Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 AC073389.1-201ENST00000595595 795 ntBASIC16.22■□□□□ 0.19
LMX1AQ8TE12 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 AC092580.3-201ENST00000430932 139 ntBASIC16.21■□□□□ 0.19
LMX1AQ8TE12 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 AC027369.6-201ENST00000525520 931 ntBASIC16.21■□□□□ 0.19
LMX1AQ8TE12 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 RN7SL204P-201ENST00000582831 262 ntBASIC16.21■□□□□ 0.19
LMX1AQ8TE12 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 AC013467.2-201ENST00000605472 835 ntBASIC16.21■□□□□ 0.19
LMX1AQ8TE12 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
LMX1AQ8TE12 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LMX1AQ8TE12 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.21■□□□□ 0.18
LMX1AQ8TE12 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
LMX1AQ8TE12 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.21■□□□□ 0.18
LMX1AQ8TE12 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LMX1AQ8TE12 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.21■□□□□ 0.18
LMX1AQ8TE12 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LMX1AQ8TE12 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.21■□□□□ 0.18
LMX1AQ8TE12 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 AC190387.1-201ENST00000551683 408 ntBASIC16.2■□□□□ 0.18
LMX1AQ8TE12 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 AC073592.8-201ENST00000624126 511 ntBASIC16.2■□□□□ 0.18
LMX1AQ8TE12 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1AQ8TE12 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 PCDHB17P-201ENST00000539533 2393 ntBASIC16.19■□□□□ 0.18
LMX1AQ8TE12 AC141586.5-201ENST00000624546 2050 ntBASIC16.19■□□□□ 0.18
LMX1AQ8TE12 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms