Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SLC25A6P2-201ENST00000497974 877 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 GREM1-201ENST00000560677 623 ntTSL 4 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 NCF1C-201ENST00000438382 1427 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 LSM12-202ENST00000585388 942 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AC090164.3-201ENST00000610780 2143 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AL805961.1-202ENST00000641562 540 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PC-208ENST00000529047 1607 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC097637.2-201ENST00000624096 1997 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC004449.1-201ENST00000564240 433 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 EDRF1-201ENST00000337623 4387 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 STK19B-204ENST00000512515 211 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AQP6-203ENST00000551733 849 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC093512.1-201ENST00000617969 520 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 BX323043.1-201ENST00000641006 1765 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 FALEC-201ENST00000416894 566 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC069335.1-201ENST00000489972 472 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 GPS2P2-201ENST00000430745 888 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PUS1-205ENST00000535067 838 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 METTL23-205ENST00000588302 925 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CITED2-204ENST00000618718 901 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC091812.2-201ENST00000619081 385 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PI4KAP1-204ENST00000612579 1703 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms