Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 AL135744.1-201ENST00000565098 629 ntBASIC18.14■□□□□ 0.49
VPS52Q8N1B4 AC015911.4-201ENST00000588022 1070 ntBASIC18.14■□□□□ 0.49
VPS52Q8N1B4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 CROCCP2-202ENST00000412962 2773 ntBASIC18.14■□□□□ 0.49
VPS52Q8N1B4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 AD000864.1-201ENST00000624076 2295 ntBASIC18.14■□□□□ 0.49
VPS52Q8N1B4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS52Q8N1B4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 KRT18P32-201ENST00000424695 1287 ntBASIC18.13■□□□□ 0.49
VPS52Q8N1B4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 DUX4L27-201ENST00000554796 1261 ntBASIC18.13■□□□□ 0.49
VPS52Q8N1B4 DUX4L17-201ENST00000557360 1267 ntBASIC18.13■□□□□ 0.49
VPS52Q8N1B4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 RARRES2P8-201ENST00000566335 367 ntBASIC18.13■□□□□ 0.49
VPS52Q8N1B4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS52Q8N1B4 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 HMGA1P7-201ENST00000406908 502 ntBASIC18.12■□□□□ 0.49
VPS52Q8N1B4 FAM58DP-201ENST00000428076 619 ntBASIC18.12■□□□□ 0.49
VPS52Q8N1B4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 COX20P2-201ENST00000452636 358 ntBASIC18.12■□□□□ 0.49
VPS52Q8N1B4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 AC069335.1-201ENST00000489972 472 ntBASIC18.12■□□□□ 0.49
VPS52Q8N1B4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 AL390955.2-201ENST00000603032 514 ntBASIC18.12■□□□□ 0.49
VPS52Q8N1B4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 AKAP8P1-201ENST00000434743 1349 ntBASIC18.12■□□□□ 0.49
VPS52Q8N1B4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms